Parallel Sequence Comparison and Alignment

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	Similar Articles Articles by Richard Hughey

1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95)

Strasbourg, France

July 24-July 26

ISBN: 0-8186-7109-2

	ASCII Text	x
	Richard Hughey, "Parallel Sequence Comparison and Alignment," Application-Specific Systems, Architectures and Processors, IEEE International Conference on, pp. 137, 1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95), 1995.

	BibTex	x
	@article{ 10.1109/ASAP.1995.522916, author = {Richard Hughey}, title = {Parallel Sequence Comparison and Alignment}, journal ={Application-Specific Systems, Architectures and Processors, IEEE International Conference on}, volume = {0}, year = {1995}, issn = {1063-6862}, pages = {137}, doi = {http://doi.ieeecomputersociety.org/10.1109/ASAP.1995.522916}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }

	RefWorks Procite/RefMan/Endnote	x
	TY - CONF JO - Application-Specific Systems, Architectures and Processors, IEEE International Conference on TI - Parallel Sequence Comparison and Alignment SN - 1063-6862 SP EP A1 - Richard Hughey, PY - 1995 KW - Sequence comparison KW - alignment KW - special-purpose systolic arrays KW - parallel architecture KW - performance analysis VL - 0 JA - Application-Specific Systems, Architectures and Processors, IEEE International Conference on ER -

Richard Hughey, University of California, Santa Cruz (UCSC)

DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/ASAP.1995.522916

Sequence comparison, a vital research tool in computational biology, is based on a simple O(n**2) algorithm that easily maps to a linear array of processors. This paper reviews and compares high-performance sequence analysis on general-purpose supercomputers and single-purpose, reconfigurable, and programmable co-processors. The difficulty of comparing hardware from published performance figures is also noted.

Index Terms:

Sequence comparison, alignment, special-purpose systolic arrays, parallel architecture, performance analysis

Citation:

Richard Hughey, "Parallel Sequence Comparison and Alignment," asap, pp.137, 1995 IEEE International Conference on Application-Specific Array Processors (ASAP'95), 1995

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