loading...
 This Article 
   
 Share 
   
 Bibliographic References 
   
 Add to: 
 
Digg
Furl
Spurl
Blink
Simpy
Google
Del.icio.us
Y!MyWeb
 
 Search 
   
28th Hawaii International Conference on System Sciences (HICSS'95)
Hawaii, USA
January 04-January 07
ISBN: 0-8186-6921-7
ASCII Text
x 
 
E. Shoop, E. Chi, J. Carlis, P. Bieganski, J. Riedl, N. Dalton, T. Newman, E. Retzel, "Implementation and testing of an automated EST processing and similarity analysis system," Hawaii International Conference on System Sciences, pp. 52, 28th Hawaii International Conference on System Sciences (HICSS'95), 1995.
 
 
BibTex
x
 
@article{ 10.1109/HICSS.1995.375351,
author = {E. Shoop and E. Chi and J. Carlis and P. Bieganski and J. Riedl and N. Dalton and T. Newman and E. Retzel},
title = {Implementation and testing of an automated EST processing and similarity analysis system},
journal ={Hawaii International Conference on System Sciences},
volume = {0},
year = {1995},
issn = {1060-3425},
pages = {52},
doi = {http://doi.ieeecomputersociety.org/10.1109/HICSS.1995.375351},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
x 
 
TY - CONF
JO - Hawaii International Conference on System Sciences
TI - Implementation and testing of an automated EST processing and similarity analysis system
SN - 1060-3425
SP
EP
A1 - E. Shoop,
A1 - E. Chi,
A1 - J. Carlis,
A1 - P. Bieganski,
A1 - J. Riedl,
A1 - N. Dalton,
A1 - T. Newman,
A1 - E. Retzel,
PY - 1995
KW - genetics; biology computing; medical information systems; database management systems; DNA; automated EST processing; similarity analysis system; system testing; expressed sequence tag sequencing projects; genes; genomes; putative function; public databases; database technology; automated sequencing technologies; similarity analysis; sequencing machine
VL - 0
JA - Hawaii International Conference on System Sciences
ER -
 
E. Shoop, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
E. Chi, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
J. Carlis, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
P. Bieganski, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
J. Riedl, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
N. Dalton, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
T. Newman, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
E. Retzel, Comput. Sci. Dept., Minnesota Univ. Med. Sch., Minneapolis, MN, USA
Expressed sequence tag (EST) sequencing projects are being undertaken in an effort to identify the function of as many genes as possible from entire genomes. Putative function can be determined by analyzing the similarity of the ESTs to sequences in the public databases. We are involved in a long-term project to research and develop database technology to store and analyze ESTs for Arabidopsis thaliana. The massive amounts of ESTs being produced through automated sequencing technologies necessitates the automated processing and similarity analysis of the ESTs. This paper describes a complete software system that takes ESTs from a sequencing machine, analyzes them for quality, and searches in public databases of previously known sequences. Automating the processing and analysis of the several thousand ESTs produced to date by the Michigan State University, Arabidopsis cDNA Sequencing Project has improved the quality of the EST data and the speed at which ESTs can be entered in the public databases.
Index Terms:
genetics; biology computing; medical information systems; database management systems; DNA; automated EST processing; similarity analysis system; system testing; expressed sequence tag sequencing projects; genes; genomes; putative function; public databases; database technology; automated sequencing technologies; similarity analysis; sequencing machine
Citation:
E. Shoop, E. Chi, J. Carlis, P. Bieganski, J. Riedl, N. Dalton, T. Newman, E. Retzel, "Implementation and testing of an automated EST processing and similarity analysis system," hicss, pp.52, 28th Hawaii International Conference on System Sciences (HICSS'95), 1995
Usage of this product signifies your acceptance of the Terms of Use.