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28th Hawaii International Conference on System Sciences (HICSS'95)
Hawaii, USA
January 04-January 07
ISBN: 0-8186-6921-7
ASCII Text
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O.V. Kel, A.G. Romachenko, A.E. Kel, A.N. Naumochkin, N.A. Kolchanov, "Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes," Hawaii International Conference on System Sciences, pp. 42, 28th Hawaii International Conference on System Sciences (HICSS'95), 1995.
 
 
BibTex
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@article{ 10.1109/HICSS.1995.375352,
author = {O.V. Kel and A.G. Romachenko and A.E. Kel and A.N. Naumochkin and N.A. Kolchanov},
title = {Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes},
journal ={Hawaii International Conference on System Sciences},
volume = {0},
year = {1995},
issn = {1060-3425},
pages = {42},
doi = {http://doi.ieeecomputersociety.org/10.1109/HICSS.1995.375352},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - Hawaii International Conference on System Sciences
TI - Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes
SN - 1060-3425
SP
EP
A1 - O.V. Kel,
A1 - A.G. Romachenko,
A1 - A.E. Kel,
A1 - A.N. Naumochkin,
A1 - N.A. Kolchanov,
PY - 1995
KW - genetics; biology computing; data structures; database management systems; medical information systems; data representation; TRRD; database; transcription regulatory regions; eukaryotic genomes; TRRD database; structural functional organization; protein factors; transcription regulation; transcription signals; eukaryotic genome; EMBL; EPD; TFD; TRANSFAC; human glycoprotein hormone gene
VL - 0
JA - Hawaii International Conference on System Sciences
ER -
 
O.V. Kel, Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
A.G. Romachenko, Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
A.E. Kel, Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
A.N. Naumochkin, Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
N.A. Kolchanov, Inst. of Cytology & Genetics, Acad. of Sci., Novosibirsk, Russia
The TRRD, a database of transcription regulatory regions of the eukaryotic genome, is described. The TRRD database contains information on the structural functional organization of the transcriptional regulatory regions, protein factors involved in transcription regulation, and transcription signals. A model is suggested for representing data in the TRRD. The module structure of transcription regulatory regions are taken into account in the model. This representation mode allows to integrate extensive and diverse information on transcription regulatory regions in the eukaryotic genome. The mode can be used to establish links between known databases. Such as EMBL, EPD, TFD, TRANSFAC. An entry of the TRRD is given as a descriptive example of the structure of the transcription regulatory regions of the alpha-subunit of the human glycoprotein hormone gene. Software allowing to fill the TRRD and search for any needed information is described.
Index Terms:
genetics; biology computing; data structures; database management systems; medical information systems; data representation; TRRD; database; transcription regulatory regions; eukaryotic genomes; TRRD database; structural functional organization; protein factors; transcription regulation; transcription signals; eukaryotic genome; EMBL; EPD; TFD; TRANSFAC; human glycoprotein hormone gene
Citation:
O.V. Kel, A.G. Romachenko, A.E. Kel, A.N. Naumochkin, N.A. Kolchanov, "Data representation in the TRRD-a database of transcription regulatory regions of the eukaryotic genomes," hicss, pp.42, 28th Hawaii International Conference on System Sciences (HICSS'95), 1995
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