In a multi-FPGA synthesis system, ideally the designer has only an abstract view of the board architecture. This abstract modeling of the underlying reconfigurable computer poses complex challenges to the synthesis and partitioning tools. Since the design specification is not constrained by the number of memory segments on the board or the number of pins between FPGAs, it is difficult for the CAD tools to transform the design into one that maps onto the multi-FPGA board. This paper describes an arbitration mechanism that bridges the abstraction between the input design and the reconfigurable architecture. Since this mechanism allows such architecture abstraction between the design and the board, it becomes easier to port a design from one target architecture to another. This arbitration mechanism introduces very little overhead in terms of area and delay. It has been used in data-dominated applications; in this paper, Fast Fourier Transform (FFT) is shown as an illustrative example.