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Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'04)
Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds
Taichung, Taiwan, ROC
May 19-May 21
ISBN: 0-7695-2173-8
ASCII Text
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I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao, "Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds," Bioinformatic and Bioengineering, IEEE International Symposium on, pp. 411, Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'04), 2004.
 
 
BibTex
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@article{ 10.1109/BIBE.2004.1317372,
author = {I-Hsuan Yang and Sheng-Ho Wang and Yang-Ho Chen and Pao-Hsian Huang and Liang Ye and Xiaoqiu Huang and Kun-Mao Chao},
title = {Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds},
journal ={Bioinformatic and Bioengineering, IEEE International Symposium on},
volume = {0},
year = {2004},
isbn = {0-7695-2173-8},
pages = {411},
doi = {http://doi.ieeecomputersociety.org/10.1109/BIBE.2004.1317372},
publisher = {IEEE Computer Society},
address = {Los Alamitos, CA, USA},
}
 
 
RefWorks Procite/RefMan/Endnote
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TY - CONF
JO - Bioinformatic and Bioengineering, IEEE International Symposium on
TI - Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds
SN - 0-7695-2173-8
SP
EP
A1 - I-Hsuan Yang,
A1 - Sheng-Ho Wang,
A1 - Yang-Ho Chen,
A1 - Pao-Hsian Huang,
A1 - Liang Ye,
A1 - Xiaoqiu Huang,
A1 - Kun-Mao Chao,
PY - 2004
KW - Sequence Alignment; Database Search
VL - 0
JA - Bioinformatic and Bioengineering, IEEE International Symposium on
ER -
 
I-Hsuan Yang, National Taiwan University
Sheng-Ho Wang, National Taiwan University
Yang-Ho Chen, National Taiwan University
Pao-Hsian Huang, National Taiwan University
Liang Ye, Iowa State University
Xiaoqiu Huang, Iowa State University
Kun-Mao Chao, National Taiwan University
Biologists highly rely on good algorithms for finding homologous regions in bimolecular sequences. An advanced homology search program named PatternHunter has recently been developed. Unlike the well-known program BLAST using a consecutive model, it utilizes a spaced seed model to attain higher sensitivity. We have developed a new program, which extends PatternHunter from a single spaced model to a multiple spaced model. In this paper, we describe methods for finding optimal single and multiple spaced models.
Index Terms:
Sequence Alignment; Database Search
Citation:
I-Hsuan Yang, Sheng-Ho Wang, Yang-Ho Chen, Pao-Hsian Huang, Liang Ye, Xiaoqiu Huang, Kun-Mao Chao, "Efficient Methods for Generating Optimal Single and Multiple Spaced Seeds," bibe, pp.411, Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'04), 2004
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