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ISSN: 1545-5963
TABLE OF CONTENTS
Special Section on the Eighth International Symposium on Bioinformatics Research and Application
Yann Christinat , Ecole Polytechnique Federale de Lausanne, Lausanne
Bernard M.E. Moret , Ecole Polytechnique Federale de Lausanne, Lausanne
Si Li , National University of Singapore, Singapore
Kwok Pui Choi , National University of Singapore, Singapore
Taoyang Wu , National University of Singapore, Singapore and University of East Anglia, Norwich
Louxin Zhang , National University of Singapore, Singapore
Special Section on the International Workshop on Data Mining in Bioinformatics
Pavel P. Kuksa , NEC Laboratories America Inc, Princeton
Said Bleik , New Jersey Institute of Technology, Newark
Meenakshi Mishra , University of Kansas, Lawrence
Jun Huan , University of Kansas, Lawrence
Min Song , Yonsei University, Seol
Special Section on the Eighth International Symposium on Bioinformatics Research and Application
Tim Wylie , Montana State University, Bozeman
Binhai Zhu , Montana State University, Bozeman
Regular Papers
Chanchala D. Kaddi , Georgia Institute of Technology, Atlanta
R. Mitchell Parry , Appalachian State University, Boone
May D. Wang , Georgia Institute of Technology, Atlanta
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
Kevin Molloy , George Mason University, Fairfax
Sameh Saleh , George Mason University, Fairfax
Amarda Shehu , George Mason University, Fairfax
Special Section on the Eighth International Symposium on Bioinformatics Research and Application
Ayshwarya Subramanian , Carnegie Mellon University, Pittsburgh
Stanley Shackney , Oncotherapeutics, Pittsburgh
Russell Schwartz , Carnegie Mellon University, Pittsburgh
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
K. S. M. Tozammel Hossain , Virginia Tech, Blacksburg
Debprakash Patnaik , Amazon Inc., Seattle
Srivatsan Laxman , Microsoft Research, Bangalore
Prateek Jain , Microsoft Research, Bangalore
Chris Bailey-Kellogg , Dartmouth College, Hanover
Naren Ramakrishnan , Virginia Tech, Blacksburg
Papers
Allen L. Hu , The Hong Kong Polytechnic University, Hong Kong
Keith C. C. Chan , The Hong Kong Polytechnic University, Hong Kong
Special Section on the Eighth International Symposium on Bioinformatics Research and Application
Matteo Re , Universita degli Studi di Milano, Milano
Giorgio Valentini , Universita degli Studi di Milano, Milano
Papers
Zhiwen Yu , South China University of Technology, Guangzhou and Hong Kong Polytechnic University, Hong Kong
Hantao Chen , South China University of Technology, Guangzhou
Jane You , Hong Kong Polytechnic University, Hong Kong
Guoqiang Han , South China University of Technology, Guangzhou
Le Li , South China University of Technology, Guangzhou
Regular Papers
Li-Yeh Chuang , I-Shou University, Kaohsiung
Cheng-Huei Yang , National Kaohsiung Institute of Marine Technology, Kaohsiung
Jui-Hung Tsai , National Kaohsiung University of Applied Sciences, Kaohsiung
Cheng-Hong Yang , National Kaohsiung University of Applied Sciences, Kaohsiung
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
Oben M. Tataw , University of California, Riverside, Riverside
Gonehal Venugopala Reddy , University of California, Riverside, Riverside
Eamonn J. Keogh , University of California, Riverside, Riverside
Amit K. Roy-Chowdhury , University of California, Riverside, Riverside
Papers
Abdollah Dehzangi , Griffith University, and National ICT Australia (NICTA), Brisbane
Kuldip Paliwal , Griffith University, Brisbane
Alok Sharma , Griffith University, Brisbane and University of the South Pacific, Fiji
Omid Dehzangi , University of Texas at Dallas, Dallas
Abdul Sattar , Griffith University, and National ICT Australia (NICTA), Brisbane
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
Ahsanur Rahman , Virginia Tech, Blacksburg
Christopher L. Poirel , Virginia Tech, Blacksburg
David J. Badger , Virginia Tech, Blacksburg
Craig Estep , Virginia Tech, Blacksburg
T. M. Murali , Virginia Tech, Blacksburg
Papers
Hsi-Che Liu , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Pei-Chen Peng , National Taiwan University, Taipei
Tzung-Chien Hsieh , National Taiwan University, Taipei
Ting-Chi Yeh , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Chih-Jen Lin , National Taiwan University, Taipei
Chien-Yu Chen , National Taiwan University, Taipei
Jen-Yin Hou , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Lee-Yung Shih , Chang Gung Memorial Hospital, Taipei, and Chang Gung University, Taoyuan
Der-Cherng Liang , Mackay Medical College and Division of Pediatric Hematology-Oncology, Mackay Memorial Hospital, New Taipei
Regular Papers
Devendra K. Shakya , Samrat Ashok Technological Institute, Vidisha
Rajiv Saxena , Jaypee University of Engineering and Technology, Raghogarh, Guna
Sanjeev N. Sharma , Samrat Ashok Technological Institute, Vidisha
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
Reginaldo M. Kuroshu , Universidade Federal de São Paulo, São José dos Campos
Ming-Chi Tsai , CMU-Pitt PhD Program in Computational Biology, Pittsburgh
Guy E. Blelloch , Carnegie Mellon University, Pittsburgh
R. Ravi , Carnegie-Mellon University, Pittsburgh
Russell Schwartz , Carnegie Mellon University, Pittsburgh
Regular Papers
Fernando A. F. Braz , Universidade Federal de Minas Gerais, Belo Horizonte
Jader S. Cruz , Universidade Federal de Minas Gerais, Belo Horizonte
Alessandra C. Faria-Campos , Universidade Federal de Minas Gerais, Belo Horizonte
Sergio V. A. Campos , Universidade Federal de Minas Gerais, Belo Horizonte
Special Section on the International Workshop on Data Mining in Bioinformatics
Short Papers
Christian Bach , University of Bridgeport, Bridgeport
Prabir Patra , University of Bridgeport, Bridgeport
Jani M. Pallis , University of Bridgeport, Bridgeport
William Sherman , Brookhaven National Labs, Long Island, Upton
Hassan Bajwa , University of Bridgeport, Bridgeport
Chao Yang , The Hong Kong University of Science and Technology, Hong Kong
Zengyou He , Dalian University of Technology, Dalian
Weichuan Yu , The Hong Kong University of Science and Technology, Hong Kong
Regular Papers
Yujin Chung , University of Wisconsin, Madison
Nicole T. Perna , University of Wisconsin, Madison
Cécile Ané , University of Wisconsin, Madison
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
Yao-ming Huang , University of California, San Francisco, San Francisco
Chris Bystroff , Rensselaer Polytechnic Institute, Troy
Short Papers
Christian Jungreuthmayer , University of Natural Resources and Life Sciences, Vienna and Austrian Centre of Industrial Biotechnology (ACIB), Vienna
Marie Beurton-Aimar , University of Bordeaux, Talence
Jürgen Zanghellini , University of Natural Resources and Life Sciences, Vienna and Austrian Centre of Industrial Biotechnology (ACIB), Vienna
Kuan-Liang Liu , National Cheng Kung University, Tainan
Tzu-Tsung Wong , National Cheng Kung University, Tainan
Regular Papers
M. K. Ahirwal , PanditDwarka Prasad Mishra Indian Institute of Information Technology, Design & Manufacturing Jabalpur, Jabalpur
A. Kumar , PanditDwarka Prasad Mishra Indian Institute of Information Technology, Design & Manufacturing Jabalpur, Jabalpur
G. K. Singh , Indian Institute of Technology Roorkee, India, Jabalpur and University of Malaya, Malaysia
Ting Chen , Texas A&M University, College Station
Ulisses M. Braga-Neto , Texas A&M University, College Station
Short Papers
Yoram Zarai , Tel-Aviv University, Tel-Aviv
Michael Margaliot , Tel-Aviv University, Tel-Aviv
Tamir Tuller , Tel-Aviv University, Tel-Aviv
Regular Papers
Kamal Al Nasr , Howard University, Washington D.C.
Chunmei Liu , Howard University, Washington D.C.
Mugizi Rwebangira , Howard University, Washington D.C.
Legand Burge , Howard University, Washington D.C.
Jing He , Old Dominion University, Norfolk
Sebastian Wandelt , Humboldt-University of Berlin, Berlin
Ulf Leser , Humboldt-University of Berlin, Berlin
Special Section on the ACM Conference on Bioinformatics Computational Biology and Biomedicine
Seth Blumenthal , Lehigh University, Bethlehem
Yisheng Tang , Lehigh University, Bethlehem
Wenjie Yang , Lehigh University, Bethlehem
Brian Chen , Lehigh University, Bethlehem
Short Papers
Mark T. Oakley , University of Birmingham, Birmingham
Elizabeth Grace Richardson , University of Birmingham, Birmingham
Harriet Carr , University of Birmingham, Birmingham
Roy L. Johnston , University of Birmingham, Birmingham
Regular Papers
Daming Zhu , Shandong University, Jinan
Lusheng Wang , City University of Hong Kong, Hong Kong
Ginny Y. Wong , The Hong Kong Polytechnic University, Hong Kong
Frank H.F. Leung , The Hong Kong Polytechnic University, Hong Kong
Sai-Ho Ling , University of Technology Sydney, Sydney
Papers
Sriganesh Srihari , The University of Queensland, Brisbane
Venkatesh Raman , The Institute of Mathematical Sciences, Chennai
Hon Wai Leong , National University of Singapore, Singapore
Mark A. Ragan , The University of Queensland, Brisbane
Yanglan Gan , Donghua University, Shanghai
Jihong Guan , Tongji University, Shanghai
Shuigeng Zhou , Fudan University, Shanghai
Weixiong Zhang , Jianghan University, Wuhan and Washington University in St. Louis, St. Louis
Regular Papers
Ramy Mourad , American University of Beirut, Beirut
Zaher Dawy , American University of Beirut, Beirut
Faruck Morcos , Rice University, Houston
Papers
Paul D. Yoo , Khalifa University, Abu Dhabi
Sami Muhaidat , Khalifa University, Abu Dhabi
Kamal Taha , Khalifa University, Abu Dhabi
Jamal Bentahar , Concordia University, Montreal
Abdallah Shami , The University of Western Ontario, London
Laleh Soltan Ghoraie , University of Waterloo, Waterloo
Forbes Burkowski , University of Waterloo, Waterloo
Shuai Cheng Li , City University of Hong Kong, Hong Kong
Mu Zhu , University of Waterloo, Canada, Waterloo
Jing Guo , Nanyang Technological University, Singapore
Ritika Jain , Nanyang Technological University, Singapore
Rui Fan , Nanyang Technological University, Singapore
Chee Keong Kwoh , Nanyang Technological University, Singapore
Mohammad Shahrokh Esfahani , Texas A&M University, College Station
Edward R. Dougherty , Texas A&M University, College Station and Translational Genomics Research Institute, Pheonix
Survey Papers
Tao Meng , University of Miami, Coral Gables
Ahmed T. Soliman , University of Miami, Coral Gables
Mei-Ling Shyu , University of Miami, Coral Gables
Yimin Yang , Florida International University, Miami
Shu-Ching Chen , Florida International University , Miami
S.S. Iyengar , Florida International University, Miami
John Yordy , University of Texas Southwestern Medical Center, Dallas
Puneeth Iyengar , University of Texas Southwestern Medical Center, Dallas
Papers
Vangelis Metsis , The University of Texas at Arlington, Arlington
Fillia Makedon , The University of Texas at Arlington, Arlington
Dinggang Shen , University of North Carolina at Chapel Hill, Chapel Hill
Heng Huang , The University of Texas at Arlington, Arlington
Ruiqi Liao , Fudan University, Shanghai
Ruichang Zhang , Fudan University, Shanghai
Jihong Guan , Tongji University, Shanghai
Shuigeng Zhou , Fudan University, Shanghai
Perspectives Papers
Liliana D. Florea , Johns Hopkins University School of Medicine, Baltimore
Steven L. Salzberg , Johns Hopkins School of Medicine and Bloomberg School of Public Health, Baltimore
Regular Papers
Shuiwang Ji , Old Dominion University, Norfolk
Wenlu Zhang , Old Dominion University, Norfolk
Rongjian Li , Old Dominion University, Norfolk
Papers
Liang Zhao , Nanyang Technological University, Singapore
Steven C.H. Hoi , Nanyang Technological University, Singapore
Zhenhua Li , Nanyang Technological University, Singapore
Limsoon Wong , National University of Singapore, Singapore
Hung Nguyen , University of Technology Sydney, Sydney
Jinyan Li , University of Technology Sydney, Sydney
Jui-Chen Hsiao , National Cheng Kung University, Tainan
Chih-Hsuan Wei , National Cheng Kung University, Tainan
Hung-Yu Kao , National Cheng Kung University, Tainan
Guoxian Yu , Southwest University, Chongqing and South China University of Technology, Guangzhou
Huzefa Rangwala , George Mason University, Fairfax
Carlotta Domeniconi , George Mason University, Fairfax
Guoji Zhang , South China University of Technology, Guangzhou
Zhiwen Yu , South China University of Technology, Guangzhou
Ying Fan , City University of Hong Kong, Hong Kong
Ruoshui Lu , City University of Hong Kong, Hong Kong
Lusheng Wang , City University of Hong Kong, Hong Kong
Massimo Andreatta , City University of Hong Kong, Hong Kong
Shuai Cheng Li , City University of Hong Kong, Hong Kong
Pawel Gorecki , University of Warsaw, Warsaw
Oliver Eulenstein , Iowa State University, Ames
Leyi Wei , Xiamen University, Xiamen
Minghong Liao , Xiamen University, Xiamen
Yue Gao , National University of Singapore, Singapore
Rongrong Ji , Xiamen University, Xiamen
Zengyou He , Dalian University of Technology, Dalian
Quan Zou , Xiamen University, Xiamen
Sandhya Prabhakaran , University of Basel, Basel
Melanie Rey , University of Basel, Basel
Osvaldo Zagordi , University of Zurich, Zürich
Niko Beerenwinkel , ETH Zürich, Zürich
Volker Roth , University of Basel, Basel
Sanghamitra Bandyopadhyay , Indian Statistical Institute, Kolkata
Koushik Mallick , Indian Statistical Institute, Kolkata
Sanghamitra Bandyopadhyay , Indian Statistical Institute, Kolkata
Saurav Mallik , Indian Statistical Institute, Kolkata
Anirban Mukhopadhyay , University of Kalyani, Nadia
Jun Sun , Jiangnan University, Wuxi
Vasile Palade , University of Oxford, Oxford
Xiaojun Wu , Jiangnan University, Wuxi
Wei Fang , Jiangnan University, Wuxi
Xuebo Song , Clemson University, Clemson
Lin Li , Murray State Univerisity, Murray
Pradip K. Srimani , Clemson Univeristy, Clemson
Philip S. Yu , University of Illinois, Chicago
James Z. Wang , Clemson Univeristy, Clemson
Falk Hüffner , TU Berlin, Berlin
Christian Komusiewicz , TU Berlin, Berlin
Adrian Liebtrau , Friedrich-Schiller-Universität Jena, Berlin
Rolf Niedermeier , TU Berlin, Berlin
Peng Qiu , Peng Qiu is with the Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332. (e-mail: peng.qiu@bme.gatech.edu).
Andri Mirzal , A. Mirzal is with the Faculty of Computing, Universiti Teknologi Malaysia, 81310 Johor Bahru, Malaysia.(email:andrimirzal@utm.my)
Daniel Svozil , D. Hoksza is with the Department of Software Engineering, Charles University, Prague, Czech Republic (E-mail: hoksza@ksi.mff.cuni.cz).
Hasan Jamil , H. M. Jamil is with the Department of Computer Science, University of Idaho, Janssen Engineering, Room 236, Moscow, ID, 83844, USA.(email:jamil@uidaho.edu.)
CEN WAN , C. Wan is with the School of Computing, University of Kent, Canterbury, United Kingdom.(email:cw439@kent.ac.uk)
Xueming Liu , Xueming Liu is with the Key Laboratory of Image Information Processing and Intelligent Control, School of Automation, Huazhong University of Science and Technology, Wuhan 430074, Hubei, China (e-mail: xm_liu@hust.edu.cn).
Min Li , Jianxin Wang is with the School of Information Science and Engineering, Central South University, Changsha 410083, China.(email:jxwang@mail.csu.edu.cn)
Zhenhua Li , Zhenhua Li is with the School of Computer Engineering, School of Computer Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798.(email:2lizhenhua@gmail.com)
Jianxin Wang , Jianxin Wang is with the School of Information Science and Engineering, Central South UniversityChangsha, 410083, China.(email:jxwang@mail.csu.edu.cn)
Madawa Weerasinghe , W. J. R. M. Priyadarshana is with the Department of Statistics, Faculty of Science, Macquarie University, Sydney NSW 2109, Australia.(email:madawa.weerasinghe@mq.edu.au)
Qiang Yu , Q. Yu is with the School of Computer Science and Technology, Xidian University, Xi’an, 710071, China.(email:qyu@mail.xidian.edu.cn)
Savas Konur , Savas Konur is with Department of Computer Science, University of Sheffield, UK.(email:s.konur,m.gheorgheg@sheffield.ac.uk)
Lina Yang , Lina Yang is with the Department of Department of Computer and Information Science, Faculty of Science and Technology, University of Macau, 999078 Macau (E-mail: yb27411@umac.mo).
Xiaojun Ding , Xiaojun Ding is with the School of Information Science and Engineering, Central South University, Changsha, 410083, China (e-mail: feathersky@gmail.com).
Papers
Damian Bogdanowicz , Gdansk University of Technology, Gdansk
Krzysztof Giaro , Gdansk University of Technology, Gdansk
Special Section on the Eighth International Symposium on Bioinformatics Research and Application
Daniele Catanzaro , Université Libre de Bruxelles (ULB), Brussels
Martine Labbe , Université Libre de Bruxelles (ULB), Brussels
Bjarni V. Halldorsson , Reykjavik University, Reykjavik
Laurent Bulteau , Université de Nantes, Nantes
Minghui Jiang , Utah State University, Logan
Xi Chen , Virginia Polytechnic Institute and State University, Arlington
Jianhua Xuan , Virginia Polytechnic Institute and State University, Arlington
Chen Wang , Virginia Polytechnic Institute and State University, Arlington
Ayesha N. Shajahan , Georgetown University Medical Center, Washington
Rebecca B. Riggins , Georgetown University Medical Center, Washington
Robert Clarke , Georgetown University Medical Center, Washington
Andre Wehe , University of Florida, Gainesville and Iowa State University, Ames
J. Gordon Burleigh , University of Florida, Gainesville
Oliver Eulenstein , Iowa State University, Ames
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