CSDL - IEEE/ACM Transactions on Computational Biology and Bioinformatics

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2009
Issue No. 2 - April-June

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IEEE/ACM Transactions on Computational Biology and Bioinformatics

April-June 2009 (vol. 6 no. 2)

ISSN: 1545-5963

Table of Contents

Visual Exploration of Three-Dimensional Gene Expression Using Physical Views and Linked Abstract Views (Abstract)

G.H. Weber, Lawrence Berkeley Nat. Lab., Berkeley, CA, USA

O. Rubel, Dept. of Comput. Sci., Univ. of Kaiserslautern, Kaiserslautern, Germany

A.H. DePace, Med. Sch., Dept. of Syst. Biol., Harvard Univ., Boston, MA, USA

C.C. Fowlkes, Dept. of Comput. Sci., Univ. of California, Irvine, CA, USA

S.V.E. Keranen, Lawrence Berkeley Nat. Lab., Berkeley, CA, USA

C.L. Luengo Hendriks, Centre for Image Anal., Uppsala Univ., Uppsala, Sweden

H. Hagen, Dept. of Comput. Sci., Univ. of Kaiserslautern, Kaiserslautern, Germany

D.W. Knowles, Lawrence Berkeley Nat. Lab., Berkeley, CA, USA

J. Malik, Comput. Sci. Div., Univ. of California, Berkeley, CA, USA

M.D. Biggin, Lawrence Berkeley Nat. Lab., Berkeley, CA, USA

B. Hamann, Dept. of Comput. Sci., Univ. of California, Davis, CA, USA

pp. 1-1

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A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats (Abstract)

Todd J. Treangen, Institut Pasteur, CNRS and UPMC University, France

Aaron E. Darling, University of California-Davis, Davis

Guillaume Achaz, UPMC University, CNRS, MNHN, IRD, UMR, Paris

Mark A. Ragan, University of Queensland and ARC Centre of Excellence, Brisbane

Xavier Messeguer, Technical University of Catalonia, Barcelona

Eduardo P.C. Rocha, Institut Pasteur, CNRS and UPMC University, France

pp. 180-189

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Network-Based Inference of Cancer Progression from Microarray Data (Abstract)

Yongjin Park, Carnegie Mellon University, Pittsburgh

Stanley Shackney, Drexel University, Pittsburgh

Russell Schwartz, Carnegie Mellon University, Pittsburgh

pp. 200-212

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Generalized Gene Adjacencies, Graph Bandwidth, and Clusters in Yeast Evolution (Abstract)

Qian Zhu, University of Ottawa, Ottawa

Zaky Adam, University of Ottawa, Ottawa

Vicky Choi, Virginia Tech, Blacksburg

David Sankoff, University of Ottawa, Ottawa

pp. 213-220

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Statistical Alignment with a Sequence Evolution Model Allowing Rate Heterogeneity along the Sequence (Abstract)

Ana Arribas-Gil, Universidad Carlos III de Madrid, Spain

Dirk Metzler, Johann Wolfgang Goethe-Universität, Germany

Jean-Louis Plouhinec, Institut de Transgénose, CNRS-IEM, France

pp. 281-295

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Parallel Clustering Algorithm for Large Data Sets with Applications in Bioinformatics (Abstract)

Victor Olman, University of Georgia, Athens

Fenglou Mao, University of Georgia, Athens

Hongwei Wu, University of Georgia, Athens

Ying Xu, University of Georgia, Athens

pp. 344-352

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