CSDL - IEEE/ACM Transactions on Computational Biology and Bioinformatics

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2008
Issue No. 3 - July-September

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IEEE/ACM Transactions on Computational Biology and Bioinformatics

July-September 2008 (vol. 5 no. 3)

ISSN: 1545-5963

Table of Contents

SPECIAL SECTION on Bioinformatics Research and Applications

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications (HTML)

Yi Pan

pp. 321-322

Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference (Abstract)

R. Ravi

pp. 323-331

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Solving the Preserving Reversal Median Problem (Abstract)

Matthias Bernt, University of Leipzig, Leipzig

Daniel Merkle, University of Southern Denmark, Odense

Martin Middendorf, University of Leipzig, Leipzig

pp. 332-347

ABSTRACT

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Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution (Abstract)

pp. 348-356

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Reconstruction of 3D Structures From Protein Contact Maps (Abstract)

pp. 357-367

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Investigating the Efficacy of Nonlinear Dimensionality Reduction Schemes in Classifying Gene and Protein Expression Studies (Abstract)

George Lee, Rutgers University, Piscataway

Carlos Rodriguez, University of Puerto Rico, Mayagez

Anant Madabhushi, Rutgers University, Piscataway

pp. 368-384

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Papers

Coclustering of Human Cancer Microarrays Using Minimum Sum-Squared Residue Coclustering (Abstract)

Hyuk Cho

Inderjit S. Dhillon

pp. 385-400

ABSTRACT

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Incorporating Gene Functions into Regression Analysis of DNA-Protein Binding Data and Gene Expression Data to Construct Transcriptional Networks (Abstract)

Peng Wei

Wei Pan

pp. 401-415

ABSTRACT

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PairProSVM: Protein Subcellular Localization Based on Local Pairwise Profile Alignment and SVM (Abstract)

pp. 416-422

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Reproducibility-Optimized Test Statistic for Ranking Genes in Microarray Studies (Abstract)

pp. 423-431

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Solving the Problem of Trans-Genomic Query with Alignment Tables (Abstract)

Douglass Stott Parker

Yi Xing

pp. 432-447

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Fine-Scale Genetic Mapping Using Independent Component Analysis (Abstract)

pp. 448-460

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Hadamard Conjugation for the Kimura 3ST Model: Combinatorial Proof Using Path Sets (Abstract)

Michael D. Hendy

Sagi Snir

pp. 461-471

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Improved Layout of Phylogenetic Networks (Abstract)

Philippe Gambette

Daniel H. Huson

pp. 472-479

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