CSDL - IEEE/ACM Transactions on Computational Biology and Bioinformatics

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2007
Issue No. 4 - October-December

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IEEE/ACM Transactions on Computational Biology and Bioinformatics

October-December 2007 (vol. 4 no. 4)

ISSN: 1545-5963

Table of Contents

Special Section on Bioinformatics Research and Applications

Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications (HTML)

Yi Pan

pp. 513-514

Removing Noise and Ambiguities from Comparative Maps in Rearrangement Analysis (Abstract)

pp. 515-522

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Comparing Genomes with Duplications: A Computational Complexity Point of View (Abstract)

pp. 523-534

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Exemplar Longest Common Subsequence (Abstract)

Paola Bonizzoni

Gianluca Della Vedova

pp. 535-543

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Fast and Practical Algorithms for Planted (l, d) Motif Search (Abstract)

Jaime Davila

Sudha Balla

Sanguthevar Rajasekaran

pp. 544-552

ABSTRACT

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SynPAM—A Distance Measure Based on Synonymous Codon Substitutions (Abstract)

pp. 553-560

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Algorithms for Efficient Near-Perfect Phylogenetic Tree Reconstruction in Theory and Practice (Abstract)

R. Ravi

pp. 561-571

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Regular Papers

Cascaded Bidirectional Recurrent Neural Networks for Protein Secondary Structure Prediction (Abstract)

Jinmiao Chen

Narendra Chaudhari

pp. 572-582

ABSTRACT

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Data-Dependent Kernel Machines for Microarray Data Classification (Abstract)

pp. 583-595

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Finding a Common Motif of RNA Sequences Using Genetic Programming: The GeRNAMo System (Abstract)

pp. 596-610

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High Confidence Rule Mining for Microarray Analysis (Abstract)

Tara McIntosh

Sanjay Chawla

pp. 611-623

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Inferring Adaptive Regulation Thresholds and Association Rules from Gene Expression Data through Combinatorial Optimization Learning (Abstract)

pp. 624-634

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Inferring Gene Regulatory Networks using Differential Evolution with Local Search Heuristics (Abstract)

Nasimul Noman

Hitoshi Iba

pp. 634-647

ABSTRACT

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An Intelligent Two-Stage Evolutionary Algorithm for Dynamic Pathway Identification From Gene Expression Profiles (Abstract)

pp. 648-704

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Phylogenetic Networks Based on the Molecular Clock Hypothesis (Abstract)

Sergey Bereg

Yuanyi Zhang

pp. 661-667

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Simplified Partial Digest Problem: Enumerative and Dynamic Programming Algorithms (Abstract)

pp. 668-680

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Inference of Genetic Regulatory Networks with Recurrent Neural Network Models Using Particle Swarm Optimization (Abstract)

Rui Xu

Donald Wunsch II

Ronald Frank

pp. 681-692

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Typing Staphylococcus aureus Using the spa Gene and Novel Distance Measures (Abstract)

pp. 693-704

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