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Yun S. Song, Rune Lyngs?, Jotun Hein, "Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics," IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 3, no. 3, pp. 239251, JulySeptember, 2006.  
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@article{ 10.1109/TCBB.2006.31, author = {Yun S. Song and Rune Lyngs? and Jotun Hein}, title = {Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics}, journal ={IEEE/ACM Transactions on Computational Biology and Bioinformatics}, volume = {3}, number = {3}, issn = {15455963}, year = {2006}, pages = {239251}, doi = {http://doi.ieeecomputersociety.org/10.1109/TCBB.2006.31}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, }  
RefWorks Procite/RefMan/Endnote  x  
TY  JOUR JO  IEEE/ACM Transactions on Computational Biology and Bioinformatics TI  Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics IS  3 SN  15455963 SP239 EP251 EPD  239251 A1  Yun S. Song, A1  Rune Lyngs?, A1  Jotun Hein, PY  2006 KW  Ancestral configurations KW  coalescent KW  recombination KW  contingency table KW  enumeration. VL  3 JA  IEEE/ACM Transactions on Computational Biology and Bioinformatics ER   
[1] S.N. Ethier and R.C. Griffiths, “The InfinitelyManySites Model as a Measure Valued Diffusion,” Annals of Probability, vol. 15, pp. 515545, 1987.
[2] S.N. Ethier and R.C. Griffiths, “On the TwoLocus Sampling Distribution,” J. Math. Biology, vol. 29, pp. 131159, 1990.
[3] P. Fearnhead and P. Donnelly, “Estimating Recombination Rates from Population Genetic Data,” Genetics, vol. 159, pp. 12991318, 2001.
[4] R.C. Griffiths, “GenealogicalTree Probabilities in the InfinitelyManySite Mode,” J. Math. Biology, vol. 27, pp. 667680, 1989.
[5] R.C. Griffiths and P. Marjoram, “Ancestral Inference from Samples of DNA Sequences with Recombination,” J. Computational Biology, vol. 3, pp. 479502, 1996.
[6] R.C. Griffiths and S. Tavaré, “Ancestral Inference in Population Genetics,” Statistics in Science, vol. 9, pp. 307319, 1994.
[7] R.C. Griffiths and S. Tavaré, “Simulating Probability Distributions in the Coalescent,” Theoretical Population Biology, vol. 46, pp. 131159, 1994.
[8] D. Gusfield, “Efficient Algorithms for Inferring Evolutionary Trees,” Networks, vol. 21, pp. 1928, 1991.
[9] J.F.C. Kingman, “The Coalescent,” Stochastic Processing Applications, vol. 13, pp. 235248, 1982.
[10] J.F.C. Kingman, “On the Genealogy of Large Populations,” J. Applied Probability, vol. 19A, pp. 2743, 1982.
[11] M.K. Kuhner, J. Yamato, and J. Felsenstein, “Estimating Effective Population Size and Mutation Rate from Sequence Data Using MetropolisHastings Sampling,” Genetics, vol. 140, pp. 14211430, 1995.
[12] M.K. Kuhner, J. Yamato, and J. Felsenstein, “Maximum Likelihood Estimation of Recombination Rates from Population Data,” Genetics, vol. 156, pp. 13931401, 2000.
[13] J. De Loera, R. Hemmecke, J. Tauzer, and R. Yoshida, “Effective Lattice Point Counting in Rational Convex Polytopes,” J. Symbolic Computation, vol. 38, pp. 12731302, 2004.
[14] R. Lyngsø, Y.S. Song, and J. Hein, “Minimum Recombination Histories by Branch and Bound,” Proc. 2005 Workshop Algorithms in Bioinformatics, pp. 239250, 2005.
[15] K.L. Simonsen and G.A. Churchill, “A Markov Chain Model of Coalescence with Recombination,” Theoretical Population Biology, vol. 52, pp. 4359, 1997.
[16] M. Stephens and P. Donnelly, “Inference in Molecular Population Genetics,” J. Royal Statistical Soc. Series B, vol. 62, pp. 605655, 2000.
[17] R.H. Ward, B.L. Frazier, K. Dew, and S. Pääbo, “Extensive Mitochondria Diversity within a Single Amerindian Tribe,” Proc. Nat'l Academy Science, vol. 88, pp. 87208724, 1991.