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Proceedings of the 2006 ACM/IEEE conference on Supercomputing
Tampa, Florida
November 11-November 17
ISBN: 0-7695-2700-0
Table of Contents
Introduction
Panel
Francine Berman, San Diego Supercomputer Center
pp. xix
Architecture
Christophe Lemuet, Hewlett Packard, Palo Alto, CA
Jean Francois, Hewlett Packard, Palo Alto, CA
Norm Jouppi, Hewlett Packard, Palo Alto, CA
pp. 1
Jung Ho Ahn, Stanford University, Stanford, California 94305, USA
Mattan Erez, Stanford University, Stanford, California 94305, USA
William J. Dally, Stanford University, Stanford, California 94305, USA
pp. 2
Adolfy Hoisie, Los Alamos National Laboratory
Greg Johnson, Los Alamos National Laboratory
Darren J. Kerbyson, Los Alamos National Laboratory
Michael Lang, Los Alamos National Laboratory
Scott Pakin, Los Alamos National Laboratory
pp. 3
Memory
Kayvon Fatahalian, Stanford University
Timothy J. Knight, Stanford University
Mike Houston, Stanford University
Mattan Erez, Stanford University
Daniel Reiter Horn, Stanford University
Larkhoon Leem, Stanford University
Ji Young Park, Stanford University
Manman Ren, Stanford University
Alex Aiken, Stanford University
William J. Dally, Stanford University
Pat Hanrahan, Stanford University
pp. 4
Pieter Bellens, Barcelona Supercomputing Center and UPC, Spain
Josep M. Perez, Barcelona Supercomputing Center and UPC, Spain
Rosa M. Badia, Barcelona Supercomputing Center and UPC, Spain
Jesus Labarta, Barcelona Supercomputing Center and UPC, Spain
pp. 5
Interconnect Routing and Scheduling
John Kim, Stanford University
William J. Dally, Stanford University
J. Dally, Stanford University
Dennis Abts, Cray Inc.
pp. 7
Zhu Ding, Union Switch & Signal
Raymond R. Hoare, Concurrent EDA, LLC
Alex K. Jones, University of Pittsburgh
Rami Melhem, University of Pittsburgh
pp. 9
Scalable Systems Software
Tiankai Tu, Carnegie Mellon University
Hongfeng Yu, University of California, Davis
Leonardo Ramirez-Guzman, Carnegie Mellon University
Jacobo Bielak, Carnegie Mellon University
Omar Ghattas, University of Texas at Austin
Kwan-Liu Ma, University of California, Davis
David R. O'Hallaron, Carnegie Mellon University
pp. 12
MPI and Communications
MPI Tools and Performance Studies
I-Hsin Chung, IBM Thomas J. Watson Research Center
Robert E. Walkup, IBM Thomas J. Watson Research Center
Hui-Fang Wen, IBM Thomas J. Watson Research Center
Hao Yu, IBM Thomas J. Watson Research Center
pp. 16
Jose Carlos Sancho, Los Alamos National Laboratory, NM
Kevin J. Barker, Los Alamos National Laboratory, NM
Darren J. Kerbyson, Los Alamos National Laboratory, NM
Kei Davis, Los Alamos National Laboratory, NM
pp. 17
Camille Coti, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
Thomas Herault, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
Pierre Lemarinier, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
Laurence Pilard, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
Ala Rezmerita, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
Eric Rodriguezb, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
Franck Cappello, INRIA-Futurs / Grand-Large, Universit´e Paris-XI, France
pp. 18
Grid Allocation and Reservation
Yang-Suk Kee, University of California at San Diego
Ken Yocum, University of California at San Diego
Andrew A. Chien, University of California at San Diego
Henri Casanova, University of Hawaii at Manoa
pp. 19
Lavanya Ramakrishnan, Renaissance Computing Institute
Laura Grit, Duke University
Adriana Iamnitchi, University of South Florida
David Irwin, Duke University
Aydan Yumerefendi, Duke University
Jeff Chase, Duke University
pp. 20
Mumtaz Siddiqui, University of Innsbruck, Austria
Alex Villazon, University of Innsbruck, Austria
Thomas Fahringer, University of Innsbruck, Austria
pp. 21
Grid Applications
Mark K. Gardner, Virginia Tech
Wu-chun Feng, Virginia Tech
Jeremy Archuleta, University of Utah
Heshan Lin, North Carolina State University
Xiaosong Ma, North Carolina State University
pp. 22
Hiroshi Takemiya, National Institute of Advanced Industrial Science and Technology, Japan
Yoshio Tanaka, National Institute of Advanced Industrial Science and Technology, Japan
Satoshi Sekiguchi, National Institute of Advanced Industrial Science and Technology, Japan
Shuji Ogata, Nagoya Institute of Technology, Japan
Rajiv K. Kalia, University of Southern California, USA
Aiichiro Nakano, University of Southern California, USA
Priya Vashishta, University of Southern California, USA
pp. 23
Byungil Jeong, University of Illinois at Chicago
Luc Renambot, University of Illinois at Chicago
Ratko Jagodic, University of Illinois at Chicago
Rajvikram Singh, University of Illinois at Chicago
Julieta Aguilera, University of Illinois at Chicago
Andrew Johnson, University of Illinois at Chicago
Jason Leigh, University of Illinois at Chicago
pp. 24
Grid Networks and Portals
Anne M. Faber, Indiana University, Bloomington, IN, U.S.A.
Minaxi Gupta, Indiana University, Bloomington, IN, U.S.A.
Camilo H. Viecco, Indiana University, Bloomington, IN, U.S.A.
pp. 25
David Del Vecchio, University of Virginia, Charlottesville, VA
Victor Hazlewood, San Diego Supercomputing Center, 9500 Gilman Dr, La Jolla, CA
Marty Humphrey, University of Virginia, Charlottesville, VA
pp. 27
Grid Scheduling and Protocols
Liang Chen, Ohio State University, Columbus OH
Qian Zhu, Ohio State University, Columbus OH
Gagan Agrawal, Ohio State University, Columbus OH
pp. 28
Daniel Nurmi, University of California, Santa Barbara
Anirban Mandal, Rice University
John Brevik, University of California, Santa Barbara
Chuck Koelbel, Rice University
Rich Wolski, University of California, Santa Barbara
Ken Kennedy, Rice University
pp. 29
Michael R. Head, State University of New York (SUNY) at Binghamton
Madhusudhan Govindaraju, binghamton.edu
Robert van Engelen, Florida State University
Wei Zhang, Florida State University
pp. 30
Grid Resource Management
Sage A. Weil, University of California, Santa Cruz
Scott A. Brandt, University of California, Santa Cruz
Ethan L. Miller, University of California, Santa Cruz
Carlos Maltzahn, University of California, Santa Cruz
pp. 31
Data Management and Query
Sriram Krishnamoorthy, Ohio State University
Umit Catalyurek, Ohio State University
Jarek Nieplocha, Pacific Northwest National Laboratory
Atanas Rountev, Ohio State University
P. Sadayappan, Ohio State University
pp. 34
Tanu Malik, Johns Hopkins University
Randal Burns, Johns Hopkins University
Nitesh V. Chawla, University of Notre Dame
Alex Szalay, Johns Hopkins University
pp. 36
Imaging and Visual Analysis
Nikos Chrisochoides, College of William and Mary, VA
Andriy Fedorov, College of William and Mary, VA
Andriy Kot, College of William and Mary, VA
Neculai Archip, Harvard University
Peter Black, Harvard University
Olivier Clatz, Harvard University
Alexandra Golby, Harvard University
Ron Kikinis, Harvard University
Simon K. Warfield, Harvard University
pp. 37
Vijay S. Kumar, Ohio State University
Benjamin Rutt, Ohio State University
Tahsin Kurc, Ohio State University
Umit Catalyurek, Ohio State University
Joel Saltz, Ohio State University
Sunny Chow, University of California San Diego
Stephan Lamont, University of California San Diego
Maryann Martone, University of California San Diego
pp. 38
Kurt Stockinger, University of California Berkely
E. Wes Bethel1, University of California Berkely
Scott Campbell, University of California Berkely
Eli Dart, University of California Berkely
Kesheng Wu, University of California Berkely
pp. 39
Biology
Xizhou Feng, Virginia Polytechnic Institute and State University
Kirk W. Cameron, Virginia Polytechnic Institute and State University
Duncan A. Buell, University of South Carolina
pp. 40
Guangming Tan, Graduate School of Chinese Academy of Sciences
Shengzhong Feng, Institute of Computing Technology, Chinese Academy of Sciences
Ninghui Sun, Institute of Computing Technology, Chinese Academy of Sciences
pp. 41
Emre H. Brookes, University of Texas at San Antonio
Rajendra V. Boppana, University of Texas at San Antonio
Borries Demeler, University of Texas Health Science Center at San Antonio
pp. 42
Molecular Dynamics
Kevin J. Bowers, D. E. Shaw Research, LLC, New York, NY
Edmond Chow, D. E. Shaw Research, LLC, New York, NY
Huafeng Xu, D. E. Shaw Research, LLC, New York, NY
Ron O. Dror, D. E. Shaw Research, LLC, New York, NY
Michael P. Eastwood, D. E. Shaw Research, LLC, New York, NY
Brent A. Gregersen, D. E. Shaw Research, LLC, New York, NY
John L. Klepeis, D. E. Shaw Research, LLC, New York, NY
Istvan Kolossvary, D. E. Shaw Research, LLC, New York, NY
Mark A. Moraes, D. E. Shaw Research, LLC, New York, NY
Federico D. Sacerdoti, D. E. Shaw Research, LLC, New York, NY
John K. Salmon, D. E. Shaw Research, LLC, New York, NY
Yibing Shan, D. E. Shaw Research, LLC, New York, NY
David E. Shaw, D. E. Shaw Research, LLC, New York, NY
pp. 43
Blake G. Fitch, IBM Thomas J. Watson Research Center
Aleksandr Rayshubskiy, IBM Thomas J. Watson Research Center
Maria Eleftheriou, IBM Thomas J. Watson Research Center
T.J. Christopher Ward, IBM Thomas J. Watson Research Center
Mark Giampapa, IBM Thomas J. Watson Research Center
Michael C. Pitman, IBM Thomas J. Watson Research Center
Robert S. Germain, IBM Thomas J. Watson Research Center
pp. 44
Particles and Continuum
Andreas Gerndt, RWTH Aachen University, Germany
Samuel Sarholz, RWTH Aachen University, Germany
Marc Wolter, RWTH Aachen University, Germany
Dieter an Mey, RWTH Aachen University, Germany
Christian Bischof, RWTH Aachen University, Germany
Torsten Kuhlen, RWTH Aachen University, Germany
pp. 46
Robert Rosenberg, Naval Research Laboratory
Guy Norton, Naval Research Laboratory
Jorge C. Novarini, Planning Systems, Inc.
Wendell Anderson, Naval Research Laboratory
Marco Lanzagorta, ITT, Advanced Engineering and Sciences
pp. 47
Hongzhang, Lawrence Berkeley National Laboratory
Erich Strohmaier, Lawrence Berkeley National Laboratory
Ji Qiang, University of California at Berkeley
David H. Bailey, Lawrence Berkeley National Laboratory
Kathy Yelick, Lawrence Berkeley National Laboratory
pp. 48
Tools and Techniques for Performance
Julie Langou, University of Tennessee, Knoxville TN
Julien Langou, University of Tennessee, Knoxville TN
Piotr Luszczek, University of Tennessee, Knoxville TN
Jakub Kurzak, University of Tennessee, Knoxville TN
Alfredo Buttari, University of Tennessee, Knoxville TN
Jack Dongarra, University of Tennessee, Knoxville TN
pp. 50
Franz Franchetti, Carnegie Mellon University
Yevgen Voronenko, Carnegie Mellon University
Markus Puschel, Carnegie Mellon University
pp. 51
Blue Gene System Software
Hao Yu, IBM Thomas J. Watson Research Center, NY
I-Hsin Chung, IBM Thomas J. Watson Research Center, NY
Jose Moreira, IBM Thomas J. Watson Research Center, NY
pp. 52
Jose Moreira, IBM Thomas J. Watson Research Center, NY
Michael Brutman, IBM Systems and Technology Group, Rochester, MN
Jose Castano, IBM Thomas J. Watson Research Center, NY
Thomas Engelsiepen, IBM Almaden Research Center, San Jose
Mark Giampapa, IBM Thomas J. Watson Research Center, NY
Tom Gooding, IBM Systems and Technology Group, Rochester, MN
Roger Haskin, IBM Almaden Research Center, San Jose
Todd Inglett, IBM Systems and Technology Group, Rochester, MN
Derek Lieber, IBM Thomas J. Watson Research Center, NY
Pat McCarthy, IBM Systems and Technology Group, Rochester, MN
Mike Mundy, IBM Systems and Technology Group, Rochester, MN
Jeff Parker, IBM Systems and Technology Group, Rochester, MN
Brian Wallenfelt, GeoDigm Corporation, Chanhassen, MN
pp. 53
M. Blocksome, IBM Systems Group, Rochester MN
C. Archer, IBM Systems Group, Rochester MN
T. Inglett, IBM Systems Group, Rochester MN
P. McCarthy, IBM Systems Group, Rochester MN
M. Mundy, IBM Systems Group, Rochester MN
J. Ratterman, IBM Systems Group, Rochester MN
A. Sidelnik, IBM Systems Group, Rochester MN
B. Smith, IBM Systems Group, Rochester MN
G. Almasi, IBM Thomas JWatson Research Center, Yorktown Heights, NY
J. Castanos, IBM Thomas JWatson Research Center, Yorktown Heights, NY
D. Lieber, IBM Thomas JWatson Research Center, Yorktown Heights, NY
J. Moreira, IBM Thomas JWatson Research Center, Yorktown Heights, NY
S. Krishnamoorthy, Ohio State University
V. Tipparaju, Pacific Northwest National Laboratory, Richland, WA
J. Nieplocha, Pacific Northwest National Laboratory, Richland, WA
pp. 54
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