CSDL - Proceedings O

O
OCCBIO
2009
2009 Ohio Collaborative Conference on Bioinformatics

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2009 Ohio Collaborative Conference on Bioinformatics

Case Western University, Cleveland, Ohio

June 15-June 17

ISBN: 978-0-7695-3685-9

Table of Contents

Papers

Cover Art (PDF)

pp. C4,C1

ABSTRACT

PDF

Title Page i (PDF)

pp. i

ABSTRACT

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Title Page iii (PDF)

pp. iii

pp. iv

Table of Contents (PDF)

pp. v-vii

ABSTRACT

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Preface (PDF)

pp. viii

ABSTRACT

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Organizing Committee (PDF)

pp. ix

ABSTRACT

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Steering Committee (PDF)

pp. x

ABSTRACT

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Program Committee (PDF)

pp. xi

ABSTRACT

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Modeling Genetic and Environmental Factors in Biological Systems Using Structural Equation Modeling: An Application to Energy Balance (Abstract)

Nora L. Nock

Li Li

Robert C. Elston

pp. 3-8

ABSTRACT

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PURCHASE ARTICLE: $19

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Visualization and Functional Analysis of Genome-Wide Association Results (Abstract)

Kanchana Narayanan

Jing Li

pp. 9-13

ABSTRACT

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PURCHASE ARTICLE: $19

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Comparison of Label Free and 18 O Labeling Mass Spectrometry in Relative Protein Quantification (Abstract)

pp. 14-18

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PURCHASE ARTICLE: $19

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A New Method for Mapping Short DNA Sequencing Reads by Using Quality Scores (Abstract)

pp. 21-25

PDF

PURCHASE ARTICLE: $19

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xIP-seq Platform: An Integrative Framework for High-Throughput Sequencing Data Analysis (Abstract)

Xu Han

Lang Li

pp. 26-31

PDF

PURCHASE ARTICLE: $19

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Computational Challenges and Solutions to the Analysis of Micro RNA Profiles in Virally-Infected Cells Derived by Massively Parallel Sequencing (Abstract)

pp. 32-36

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PURCHASE ARTICLE: $19

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TIGERA: A New Tool for Illumina Gene Expression Reads Analysis (Abstract)

Xiaodong Bai

Parwinder S. Grewal

pp. 37-41

ABSTRACT

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PURCHASE ARTICLE: $19

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Understanding Sequence Variability of RNA Motifs Using Geometric Search and IsoDiscrepancy Matrices (Abstract)

pp. 45-50

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Beyond Identity- When Classical Homology Searching Fails, Why, and What you Can do About It (Abstract)

pp. 51-56

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RNA Secondary Structure Prediction in the Presence of Single-Stranded Binding Proteins (Abstract)

Robert A. Forties

Ralf Bundschuh

pp. 57

ABSTRACT

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Computation of Putative Targets for Human and Mouse snoRNAs, Responsible for Prader-Willi Syndrome (Abstract)

pp. 58

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Discovery of Regulatory Networks in Plants by Linking Promoter and Transcription Factor Databases (Abstract)

pp. 61-64

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Construction of Genomic Regulatory Encyclopedias: Strategies and Case Studies (Abstract)

pp. 65-70

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Identification of a Breast Cancer Associated Regulatory Network (Abstract)

pp. 71-75

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Comparative Assessment of DNA Assemblers for Assembling Expressed Sequence Tags (Abstract)

pp. 79-82

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A Comparision of Codon Usage Trends in Prokaryotes (Abstract)

pp. 83-86

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Parallel Approaches for SWAMP Sequence Alignment (Abstract)

Shannon Steinfadt

Kevin Schaffer

pp. 87-92

ABSTRACT

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The Evolution of Multidrug Resistance in a Hospital Pathogen (Abstract)

Mark D. Adams

pp. 95

ABSTRACT

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HIV Evolution: Fast or Slow? (Abstract)

Helen Piontkivska

Sinu Paul

pp. 96

ABSTRACT

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Uncovering Androgen Responsive Regulatory Networks in Prostate Cancer (Abstract)

pp. 99-103

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Comparative Analysis of Modularity in Biological Systems (Abstract)

Xin Li

Sinan Erten

Gurkan Bebek

Mehmet Koyutürk

Jing Li

pp. 104-109

ABSTRACT

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Improving Functional Module Detection (Abstract)

pp. 110-115

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Perceived Cost of Auxotrophic Amino Acids in Two Bacterial Species (Abstract)

pp. 119-122

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SNP-SNP Interactions between dNTP Supply Enzymes and Mismatch DNA Repair in Breast Cancer (Abstract)

I Jung Feng

Tomas Radivoyevitch

pp. 123-128

ABSTRACT

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Binary Classification Based on Potentials (Abstract)

pp. 129-132

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Quantile Scores for Combining Results from Different Microarray Platforms (Abstract)

Sadik A. Khuder

Peter Bazeley

pp. 135-138

ABSTRACT

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Comparison of Binary Classification Based on Signed Distance Functions with Support Vector Machines (Abstract)

Di Wu

pp. 139-143

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Author Index (PDF)

pp. 144-145

ABSTRACT

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Publisher's Information (PDF)

pp. 146

ABSTRACT

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