CSDL - Proceedings I

Title Page i (PDF)

pp. i

Title Page iii (PDF)

pp. iii

pp. iv

Table of Contents (PDF)

pp. v-xiv

Message from General Chair (PDF)

pp. xv

Message from Program Chairs (PDF)

pp. xvi

Organizing Committee (PDF)

pp. xvii

Steering Committee (PDF)

pp. xviii-xix

Program Committee (PDF)

pp. xx-xxii

Reviewers (PDF)

pp. xxiii-xxiv

Planery Keynote Abstracts (PDF)

pp. xxv-xxxvii

Gene Selection for Microarray Expression Data with Imbalanced Sample Distributions (Abstract)

pp. 3-9

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Redundant Gene Selection Based on Particle Swarm Optimization (Abstract)

pp. 10-16

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Investigating Gene and MicroRNA Expression in Glioblastoma (Abstract)

Li Luo

Li Jin

pp. 17-22

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Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering (Abstract)

Ying Li

pp. 23-29

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PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis (Abstract)

pp. 30-36

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Cross-Domain Neurobiology Data Integration and Exploration (Abstract)

pp. 37-43

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Study DNA Microarray Gene Expression Data of Alzheimer's Disease by Independent Component Analysis (Abstract)

pp. 44-47

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Probabilistic Model Based Hough Transform for Detection of Co-expression Patterns in Three-Color cDNA Microarray Data (Abstract)

pp. 48-51

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Multiclass Gene Selection on Microarray Data Using l1-norm Least Square Regression (Abstract)

Xiyi Hang

pp. 52-55

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Framework for Knowledge-Based Integrative Analysis of Microarray Data (Abstract)

pp. 56-59

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Genome Evolution in Malaria Parasites: I. Core Genome Components (Abstract)

pp. 63-69

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Accelerating Genome-Wide Association Studies Using CUDA Compatible Graphics Processing Units (Abstract)

pp. 70-76

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Genomic Comparison of Bacterial Species Based on Metabolic Characteristics (Abstract)

Li Liao

pp. 77-83

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The Core and Pan-Genome of the Vibrionaceae (Abstract)

pp. 84-90

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An Improved Algorithm for the Location of Heaviest Segments in Genomic Sequences (Abstract)

Nikola Stojanovic

pp. 91-97

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GeneIndex: An Open Source Parallel Program for Enumerating and Locating Words in a Genome (Abstract)

pp. 98-102

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Proteogenomic Mapping for Structural Annotation of Prokaryote Genomes (Abstract)

pp. 103-106

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A Classification System for Predicting RNA Hairpin Loops (Abstract)

pp. 109-115

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Layout and Post-Processing of Transcriptional Modules (Abstract)

pp. 116-121

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Mapping miRNA Regulation to Functional Gene Sets (Abstract)

pp. 122-125

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A Primer Design Algorithm for Global Analysis of CpG Methylation (Abstract)

pp. 126-130

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Accurate Prediction of Alternatively Spliced Cassette Exons Using Evolutionary Conservation Information and Logitlinear Model (Abstract)

pp. 131-134

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A Neural Network Based on Rough Set (RSNN) for Prediction of Solitary Pulmonary Nodules (Abstract)

pp. 135-138

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Variation in the Predicted Biosynthetic Capabilities of Seven Vibrionaceae (Abstract)

pp. 139-142

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Molecular Cloning and Expression of Ppdc-ldhL Fusion Gene in Zymomonas Mobilis ATCC 10988 (Abstract)

pp. 143-146

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Clustering of SNPs by a Structural EM Algorithm (Abstract)

Yulong Zhang

Liang Ji

pp. 147-150

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A Parallel Algorithm for Three-Profile Alignment Method (Abstract)

pp. 153-159

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Mapping Transcription Factors from a Model to a Non-model Organism (Abstract)

pp. 160-166

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On the Design of RNA Sequences for Realizing Extended Shapes (Abstract)

pp. 167-173

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Practical and Efficient Algorithms for Degenerate and Weighted Sequences Derived from High Throughput Sequencing Technologies (Abstract)

pp. 174-180

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An Adaptive Suffix Tree Based Algorithm for Repeats Recognition in a DNA Sequence (Abstract)

pp. 181-184

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A Bayesian Approach for Identifying miRNA Targets by Combining Sequence Prediction and Expression Profiling (Abstract)

pp. 185-189

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Next Generation Sequence Analysis Using Genetic Algorithms on Multi-core Technology (Abstract)

pp. 190-191

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Structural Domain Based Multiple Instance Learning for Predicting Gram-Positive Bacterial Protein Subcellular Localization (Abstract)

S.Y. Mei

Wang Fei

pp. 195-200

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Biological Features for Sequence-Based Prediction of Protein Stability Changes upon Amino Acid Substitutions (Abstract)

pp. 201-206

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Gang Chen

Jianxin Wang

Min Li

pp. 207-210

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Jianxing Wang

Lijian Dai

Min Li

pp. 211-214

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Using Mutual Information and Models of Evolution for Improved Pattern Petection (Abstract)

pp. 215-221

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Network Approaches for Shotgun Proteomics Data Analysis (Abstract)

Jing Li

pp. 222

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SVM-Based Approach for Predicting DNA-Binding Residues in Proteins from Amino Acid Sequences (Abstract)

Xin Ma

pp. 225-229

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Putative Cell Cycle Related Genes in Plasmodium Falciparum (Abstract)

pp. 230-236

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Identifying New Methylated Arginines via Granular Decision Fusion with SVM Modeling (Abstract)

Nan Xie

pp. 237-241

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A Comparative Study of Ensemble Learning Approaches in the Classification of Breast Cancer Metastasis (Abstract)

pp. 242-245

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New Descriptors of Evolutionary Information for Accurate Prediction of DNA and RNA-Binding Residues in Protein Sequences (Abstract)

Liangjiang Wang

Caiyan Huang

pp. 246-250

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Improving Prediction of the Contact Numbers of Residues in Proteins from Primary Sequences (Abstract)

pp. 251-254

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Protein Remote Homology Detection Using Order Profiles (Abstract)

Bin Liu

Lei Lin

Xiaolong Wang

Xuan Wang

pp. 255-260

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Semi-supervised Learning of Text Classification on Bacterial Protein-Protein Interaction Documents (Abstract)

Xu Gao

pp. 263-270

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ANN Based Protein Function Prediction Using Integrated Protein-Protein Interaction Data (Abstract)

Lei Shi

Young-Rae Cho

Aidong Zhang

pp. 271-277

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3D-interologs: A Protein-Protein Interacting Evolution Database across Multiple Species (Abstract)

pp. 278-285

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Assessing the Most Effective Depth for PPI Analysis (Abstract)

pp. 286-292

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Discovery of Motif Pairs from Protein-Protein Interaction Networks (Abstract)

Hong Zhang

Yun Xu

Yuzhong Zhao

pp. 293-296

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A Systems Biology Approach to Identify Affected Regulatory and Signaling Circuits in Protein Interaction Networks (Abstract)

pp. 297-300

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Automaton Models of Computational Genetic Regulatory Networks with Combinatorial Gene-Protein Logical Interactions (Abstract)

Peter C.Y. Chen

Yulin Weng

pp. 301-307

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Towards a Comprehensive HBV-Human Interaction Map (Abstract)

Fei Li

Peng LI

pp. 311-314

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Prediction of Peptides Binding to MHC Class I Alleles by Partial Periodic Pattern Mining (Abstract)

pp. 315-318

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MRI Based Fat Segmentation at 7T with Confidence Image (Abstract)

pp. 319-322

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An Artificial Immune System for Temporal Anomaly Detection Using Cell Activation Thresholds and Clonal Size Regulation with Homeostasis (Abstract)

Mário J. Antunes

Manuel E. Correia

pp. 323-326

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Global Stochastic Contact Modeling of Infectious Diseases (Abstract)

pp. 327-330

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Christian Nørgaard Storm Pedersen

Optimal Overlay of Ligands with Flexible Bonds Using Differential Evolution (Abstract)

Thomas Greve Kristensen

pp. 331-334

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Analyzing Response Feasibility for Bioemergencies (Abstract)

pp. 337-343

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Estimation of Heart Rate Variability Changes during Different Visual Stimulations Using Non-invasive Continuous ECG Monitoring System (Abstract)

pp. 344-347

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A Study on Prognosis of Brain Tumors Using Fuzzy Logic and Genetic Algorithm Based Techniques (Abstract)

Arpita Das

Mahua Bhattacharya

pp. 348-351

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Feature Extraction and Classification of EEG Signals Using Wavelet Transform, SVM and Artificial Neural Networks for Brain Computer Interfaces (Abstract)

Mohammad Reza Nazari Kousarrizi

AbdolReza Asadi Ghanbari

Mohammad Teshnehlab

Mahdi Aliyari Shorehdeli

Ali Gharaviri

pp. 352-355

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A Novel Method of De-noising and Classifying on Mental EEG of Imaging Left-Right Hands Movement (Abstract)

pp. 356-359

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A Computational Framework to Study Public Health Epidemiology (Abstract)

Courtney D. Corley

Armin R. Mikler

pp. 360-363

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Exploring Systems Biology Approaches to Traditional Chinese Medicine Cancer Research (Abstract)

Dan Xi

Jeffrey D. White

pp. 367-370

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Genomic Imaging: A Modern Environment for TCM Research (Abstract)

pp. 371-376

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YinYang Bipolar Relativity - A Unifying Theory of Nature, Agents and Life Science (Abstract)

Wen-Ran Zhang

pp. 377-383

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Concordance of Diagnosis Based on Zangfu-Organs Syndrome Differentiation by Clinicians of Traditional Chinese Medicine (Abstract)

pp. 384-387

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A TCM Platform for Maters' Experience Sharing (Abstract)

Lei Ge

pp. 388-391

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Facial Complexion Acquisition and Recognition System for Clinical Diagnosis in Traditional Chinese Medicine (Abstract)

Di Dan

pp. 392-396

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TCM in Innate Immunity: A YinYang-N-Element Hypothesis of the Innate Immunological System (Abstract)

pp. 397-401

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In-Silico Effects of Mg2+ Diffusion Rates on Stochastic Event Based Simulation of the PhoPQ System (Abstract)

pp. 405-411

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Global Network Features of Cancer Genes in the Human Interactome (Abstract)

pp. 412-416

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A Granular Hierarchical Approach to Biophysical and Biochemical Evaluations of Transgenic Modifications (Abstract)

pp. 417-421

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Integrative Computational Identifications of the Signaling Pathway Network Related to TNF-alpha Stimulus in Vascular Endothelial Cells (Abstract)

Jin Gu

Shao Li

Yang Chen

Yanda Li

pp. 422-427

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Using Frequent Co-expression Network to Identify Gene Clusters for Breast Cancer Prognosis (Abstract)

pp. 428-434

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A Numerical Study of Pulsatile Flow Through a Hollow Fiber Cartridge: Growth Factor-Receptor Binding and Dissociation Analysis (Abstract)

Kimberly Forsten-Williams

Jun Zhang

pp. 435-441

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Pathway and Network Analysis of Schizophrenia Candidate Genes under Meta-Analysis Linkage Peaks (Abstract)

pp. 442-447

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Enhancing Automatic Biological Pathway Generation with GO-Based Gene Similarity (Abstract)

pp. 448-453

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Estimation of Kinetic Rates of MAP Kinase Activation from Experimental Data (Abstract)

Tianhai Tian

pp. 457-462

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Connecting Biological Themes Using a Single Human Network of Gene Associations (Abstract)

pp. 463-471

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Statistical Analysis of Discrete Dynamical System Models for Biological Networks (Abstract)

Zhengyu Ouyang

Mingzhou Song

pp. 472-478

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Parameterized Complexity of Finding Elementary Modes in Metabolic Networks (Abstract)

pp. 479-482

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Two Dimensional Modeling and Fractal Characterization of Tumor Vascular Network (Abstract)

Radu Dobrescu

Loretta Ichim

pp. 483-486

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Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information (Abstract)

pp. 487-490

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Dynamic Propagation Properties of Virus-Host Protein Interaction Network (Abstract)

Fei Li

Peng LI

pp. 491-493

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Adagarla Bhargav Srinivas

Systematically Identifying Genes and Pathways in Multiple Cancer Types Using HGD & PSO-SVM (Abstract)

Mahesh Visvanathan

Gerald Lushington

Sitta Sittapalam

pp. 494-497

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Notice of Violation of IEEE Publication Principles

Constraint Projections for Discriminative Support Vector Machines (Abstract)

Zhao Zhang

Ning Ye

pp. 501-507

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Regularized Recurrent Least Squares Support Vector Machines (Abstract)

pp. 508-511

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Huilin Xiong

Panfei Shi

pp. 512-516

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EasyEnsemble and Feature Selection for Imbalance Data Sets (Abstract)

Tian-Yu Liu

pp. 517-520

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Genetic Algorithm Based Semi-feature Selection Method (Abstract)

pp. 521-524

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Combination Forecasting Model for Mid-long Term Load Based on Least Squares Support Vector Machines and a Mended Particle Swarm Optimization Algorithm (Abstract)

pp. 525-528

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An Improved EM-Based Semi-supervised Learning Method (Abstract)

pp. 529-532

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A Novel Nonlinear Dimensionality Reduction Method for Robust Wood Image Recognition (Abstract)

Zhao Zhang

Ning Ye

pp. 533-536

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Designing the Self-Adaptive Fuzzy Neural Networks (Abstract)

Liu Fang

pp. 537-540

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An Effective Multi-level Immune Algorithm for Graph Bipartitionin (Abstract)

pp. 543-548

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A Combination Approach to Cluster Validation Based on Statistical Quantiles (Abstract)

Amparo Albalate

David Suendermann

pp. 549-555

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Collision Description of Clustering (Abstract)

pp. 556-560

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A Vector Operation Based Fast Association Rules Mining Algorithm (Abstract)

Liu Zhi

Sang Guoming

Lu Mingyu

pp. 561-564

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Christian Norgaard Storm Pedersen

A Quadratic Time Algorithm for Computing the Quartet Distance between Two General Trees (Abstract)

Thomas Mailund

Jesper Nielsen

pp. 565-568

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Kalman Filtering Design Based on Real-Time Updating of Noise Matrix (Abstract)

pp. 569-572

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Applying Particle Swarm Optimization to Transfer Function Specification for Direct Volume Rendering (Abstract)

Rui Qi

pp. 573-576

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PTS-RNSA: A Novel Detector Generation Algorithm for Real-Valued Negative Selection Algorithm (Abstract)

Yujian Wang

Wenjian Luo

pp. 577-583

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Semantic Role Labeling Based on Dependency Tree with Multi-features (Abstract)

pp. 584-587

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A Collaborative Car Auto-Navigation Framework Based on Intelligent Trajectory Mining (Abstract)

pp. 591-596

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Security Data Mining in an Ontology for Vulnerability Management (Abstract)

Ju An Wang

Minzhe Guo

pp. 597-603

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Fingerprint Ridge Distance Estimation Based on Ridge Search (Abstract)

pp. 604-607

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An Improved Asymmetric Link Bandwidth Measurement Algorithm (Abstract)

Wei Du

pp. 608-611

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The Application of Improved Immunogenetic Algorithm in Signal Timing (Abstract)

Rong Gu

Hongyun Zhang

pp. 612-615

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Modeling Confidentiality in a Simplified Database Access (Abstract)

pp. 616-618

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RFID Dynamic Grouping Anti-collision Algorithm Based on FCM (Abstract)

pp. 619-622

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Design of Obstacle Modal Discrimination System Based on the Neural Network (Abstract)

Jianyi Lin

Qian Li

pp. 623-626

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Feature Mining and Intelligent Computing for MP3 Steganalysis (Abstract)

pp. 627-630

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Author Index (PDF)

pp. 631-636

Roster Page (PDF)

pp. 638