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2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences
Poster: Biochemical signaling: A discrete simulation with memory enhancement
Orlando, FL, USA
February 03-February 05
ISBN: 978-1-61284-851-8
| ASCII Text | x | ||
| "Poster: Biochemical signaling: A discrete simulation with memory enhancement," Computational Advances in Bio and Medical Sciences, IEEE International Conference on, pp. 257, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011. | |||
| BibTex | x | ||
| @article{ 10.1109/ICCABS.2011.5729910, author = {}, title = {Poster: Biochemical signaling: A discrete simulation with memory enhancement}, journal ={Computational Advances in Bio and Medical Sciences, IEEE International Conference on}, volume = {0}, year = {2011}, isbn = {978-1-61284-851-8}, pages = {257}, doi = {http://doi.ieeecomputersociety.org/10.1109/ICCABS.2011.5729910}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - Computational Advances in Bio and Medical Sciences, IEEE International Conference on TI - Poster: Biochemical signaling: A discrete simulation with memory enhancement SN - 978-1-61284-851-8 SP EP PY - 2011 KW - predator-prey systems KW - biochemistry KW - biology computing KW - circadian rhythms KW - differential equations KW - physiological models KW - oscillatory behavior KW - biochemical signaling KW - memory enhancement KW - reaction model KW - continuous concentration-based approach KW - ordinary differential equations KW - Lotka-Volterra predator-prey model KW - circadian rhythm model KW - Gillespie algorithm KW - Mathematical model KW - Biological system modeling KW - Differential equations KW - Computational modeling KW - Heuristic algorithms KW - Circadian rhythm KW - Electronic mail KW - ordinary differential equations KW - Discrete modeling KW - Lotka-Volterra KW - circadian rhythm KW - Gillespie VL - 0 JA - Computational Advances in Bio and Medical Sciences, IEEE International Conference on ER - | |||
We will describe the memory enhancement and give a simple three reaction model to illustrate the differences between our technique and a continuous, concentration-based approach using a system of ordinary differential equations. Furthermore, we provide our results from the modeling of two well-known models: the Lotka-Volterra predator-prey and a circadian rhythm model. For these models, we provide the results of our simulation technique in comparison to results from ordinary differential equations and the Gillespie Algorithm. We show that our algorithm, while being faster than Gillespie's approach, is capable of generating oscillatory behavior where ordinary differential equations do not.
Index Terms:
predator-prey systems,biochemistry,biology computing,circadian rhythms,differential equations,physiological models,oscillatory behavior,biochemical signaling,memory enhancement,reaction model,continuous concentration-based approach,ordinary differential equations,Lotka-Volterra predator-prey model,circadian rhythm model,Gillespie algorithm,Mathematical model,Biological system modeling,Differential equations,Computational modeling,Heuristic algorithms,Circadian rhythm,Electronic mail,ordinary differential equations,Discrete modeling,Lotka-Volterra,circadian rhythm,Gillespie
Citation:
"Poster: Biochemical signaling: A discrete simulation with memory enhancement," iccabs, pp.257, 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
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