Jan. 4, 1995 to Jan. 7, 1995
Zhirong Sun , Dept. of Biol. Sci. & Biotechnol., Tsinghua Univ., Beijing, China
T. Blundell , Dept. of Biol. Sci. & Biotechnol., Tsinghua Univ., Beijing, China
Supersecondary motifs have been analysed in 240 proteins defined at resolutions of 0.25 nm or better. Using five classes of residue conformation (a,b,e,l,t) in the non-regular structure regions, we have identified 50 classes that occur at least five times, and eleven classes that occur more than twenty-five times. The sequence pattern of the eleven most frequently occurring motifs have been characterised. The results should be useful for homology modelling and structure prediction.
proteins; biology computing; chemistry computing; database management systems; common supersecondary structure; motifs; protein database; supersecondary motifs; proteins; residue conformation; nonregular structure regions; sequence pattern; homology modelling; structure prediction
Zhirong Sun, T. Blundell, "The pattern of common supersecondary structure (motifs) in protein database", HICSS, 1995, 2014 47th Hawaii International Conference on System Sciences, 2014 47th Hawaii International Conference on System Sciences 1995, pp. 312, doi:10.1109/HICSS.1995.375325