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38th Annual Symposium on Foundations of Computer Science (FOCS '97)
Optimal suffix tree construction with large alphabets
Miami Beach, FL
October 19-October 22
ISBN: 0-8186-8197-7
| ASCII Text | x | ||
| M. Farach, "Optimal suffix tree construction with large alphabets," Foundations of Computer Science, IEEE Annual Symposium on, pp. 137, 38th Annual Symposium on Foundations of Computer Science (FOCS '97), 1997. | |||
| BibTex | x | ||
| @article{ 10.1109/SFCS.1997.646102, author = {M. Farach}, title = {Optimal suffix tree construction with large alphabets}, journal ={Foundations of Computer Science, IEEE Annual Symposium on}, volume = {0}, year = {1997}, issn = {0272-5428}, pages = {137}, doi = {http://doi.ieeecomputersociety.org/10.1109/SFCS.1997.646102}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - Foundations of Computer Science, IEEE Annual Symposium on TI - Optimal suffix tree construction with large alphabets SN - 0272-5428 SP EP A1 - M. Farach, PY - 1997 KW - pattern matching; suffix tree; large alphabets; data structure; combinatorial pattern matching; integer alphabet; sorting; integer alphabets VL - 0 JA - Foundations of Computer Science, IEEE Annual Symposium on ER - | |||
The suffix tree of a string is the fundamental data structure of combinatorial pattern matching. Weiner (1973), who introduced the data structure, gave an O(n)-time algorithm for building the suffix tree of an n-character string drawn from a constant size alphabet. In the comparison model, there is a trivial /spl Omega/(n log n)-time lower bound based on sorting, and Weiner's algorithm matches this bound trivially. For integer alphabets, a substantial gap remains between the known upper and lower bounds, and closing this gap is the main open question in the construction of suffix trees. There is no super-linear lower bound, and the fastest known algorithm was the O(n log n) time comparison based algorithm. We settle this open problem by closing the gap: we build suffix trees in linear time for integer alphabet.
Index Terms:
pattern matching; suffix tree; large alphabets; data structure; combinatorial pattern matching; integer alphabet; sorting; integer alphabets
Citation:
M. Farach, "Optimal suffix tree construction with large alphabets," focs, pp.137, 38th Annual Symposium on Foundations of Computer Science (FOCS '97), 1997
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