CSDL - Proceedings F

Cover Credit (PDF)

pp. i

Title Page (PDF)

pp. ii

pp. iii

Message from the Conference Chairs (PDF)

pp. iv-v

About FBIT 2007 (PDF)

pp. vi-vii

Cell Biology and Biotechnology

Signaling Networks Involved in Retinal Degeneration in Mice (Abstract)

pp. 3-6

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Proteomic Analysis of a Response to Long-Chain Fatty Acid in Escherichia coli and Its Application (Abstract)

pp. 7-10

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Modeling of the Effect of Crosstalk in Apoptotic Pathways on Caspase-3 Activation (Abstract)

Jinki Kim

Gwan-Su Yi

pp. 11-16

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Screening of Apoptotic Genes by Morphological Analysis of High Throughput Fluorescence Microscopy Images (Abstract)

pp. 16-20

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Isolation and Characterization of Salt-sensitive Mutants of the Moderately Halophilic Bacterium, Salinivibrio sp. DL6 (Abstract)

pp. 21-25

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Simulating Biological Pathways with a Continuous Petri Net Using Runge-Kutta Methods (Abstract)

pp. 26-31

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Reconstruction of Gene Regulatory Networks by Neuro-fuzzy Inference Systems (Abstract)

Sung Hoon Jung

Kwang-Hyun Cho

pp. 32-37

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In silico Ligand-Based (LB) and Docking-Based (DB) 3D-QSAR Study of Potent Chk2 Inhibitors (Abstract)

pp. 38-42

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Relationships between Structures of Hydroxyflavone Derivatives and their Anti-oxidative Activities (Abstract)

pp. 43-47

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The Receptor Guided 3D-QSAR Method is a Powerful Tool to Design More Potent IGF-1R Inhibitors (Abstract)

pp. 48-54

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Genomics, Transcriptomics, PCR and Biomarkers

ConPath: Scaffold Analysis Tool Using Mate-Pair Information for Genome Sequencing (Abstract)

pp. 55-59

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A Method for Evaluating Quality of Clustering DNA Fragments Encoded in Different Nucleotide Frequencies (Abstract)

Chon-Kit Kenneth Chan

pp. 60-63

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A Novel Screening Method of Dextran Binding Antibody Using Phage Display Libraries (Abstract)

pp. 64-68

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A Simple DNA Chip for Diagnosis of Most Common Corneal Dystrophies Caused by ßigh3 Gene Mutations (Abstract)

pp. 69-74

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MarSelHR: A Haplotype Reconstruction System Using Linkage Disequilibrium (Abstract)

Sang-Soo Yeo

Sung Kwon Kim

pp. 75-80

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Chronic Hepatitis Classification Using SNP Data and Data Mining Techniques (Abstract)

Jin Kim

pp. 81-86

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A New Stilbene Synthase Gene from Muscadine (Vitis rotundifolia) Grape Berry (Abstract)

Hemanth KN. Vasanthaiah

Ramesh Katam

Sheikh M. Basha

pp. 87-94

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Proteomics

Prediction of Interacting Motif Pairs Using Stochastic Boosting (Abstract)

pp. 95-100

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Resonant Recognition Model for Prediction of 'Lead-In Regions' in Proteins (Abstract)

pp. 101-106

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Analysis of HCV Envelope Proteins Interacting with Human Proteins (Abstract)

Chirag Nepal

pp. 107-112

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Discovering Inter-Domain Paths between Hepatitis C Virus NS5A and Human Liver Proteins (Abstract)

Guang-Zheng Zhang

pp. 113-118

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Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins (Abstract)

Yu Chen

Guangyu Cui

pp. 119-124

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A Study of Protein Secondary Structure Hydrogen Bonds under Oxidizing Conditions (Abstract)

Christopher M. Wood

H.J. Kadim

pp. 125-128

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Computational Strategies for Protein Quantitation in 2D Electrophoresis Gel Image Processor for Matlab (Abstract)

Umer Zeeshan Ijaz

Safee Ullah Chaudhary

Moon Sang Don

Kyung Youn Kim

pp. 129-134

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Protein Structure Computation (Abstract)

Gwyn Skone

Stephen Cameron

pp. 135-140

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Estimating the Reliability of Protein-Protein Interactions (Abstract)

Byungkyu Park

pp. 141-146

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Protein Classification by Matching 3D Structures (Abstract)

pp. 147-152

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Seyed Koosha Golmohammadi

Classification of Cell Membrane Proteins (Abstract)

pp. 153-158

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Identifying Functional Groups by Finding Cliques and Near-Cliques in Protein Interaction Networks (Abstract)

Guangyu Cui

Yu Chen

pp. 159-164

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Feature Extraction in Spatially-Conserved Regions and Protein Functional Classification (Abstract)

pp. 165-170

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Proteomic Approach to Screen Peanut Genotypes with Enhanced Nutritional Qualities (Abstract)

Ramesh Katam

Hemanth KN. Vasanthaiah

Sheikh M. Basha

pp. 171-178

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Microarrays

A Graph-Theoretic Classification of Gene Expression Microarray Data of Cancer (Abstract)

Saejoon Kim

pp. 179-182

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A Direct Clustering Method for Imperfect Microarray Data without Imputation (Abstract)

pp. 183-187

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k-TSN(k-Top Scoring N): Microarray Data Classification Based on Rank-Comparison Decision Rules (Abstract)

pp. 188-192

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DNA Microarray Classification with Compact Single Hidden-Layer FeedForward Neural Networks (Abstract)

pp. 193-198

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Detecting Regulator-Target Gene Pairs from Expression Profile of Microarray (Abstract)

pp. 199-204

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An Efficient Two-Phase Algorithm to Find Gene-Specific Probes for Large Genomes (Abstract)

pp. 205-210

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Selecting Informative Genes from Microarray Data for Cancer Classification with Genetic Programming Classifier Using K-Means Clustering and SNR Ranking (Abstract)

Supoj Hengpraprohm

Prabhas Chongstitvatana

pp. 211-218

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Mohammad Soltany Rezaee Rad

Mathematical Genomics

Three Dimensional Chaos Game Representation of Genomic Sequences (Abstract)

Iman Tavassoly

Omid Tavassoly

Negar Mottaghi Dastjerdi

pp. 219-223

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Mohammad Soltany Rezaee Rad

Multifractal Analysis of Chaos Game Representation Images of Mitochondrial DNA (Abstract)

Iman Tavassoly

Omid Tavassoly

Negar Mottaghi Dastjerdi

pp. 224-229

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Improving Training Speed of Support Vector Machines by Creating Exploitable Trends of Lagrangian Variables: An Application to DNA Splice Site Detection (Abstract)

Jason Li

Saman K. Halgamuge

pp. 230-233

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Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence (Abstract)

pp. 234-240

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Infectomics

Early, Easy, Inexpensive Diagnosis—An Urgent Need for Global TB Control (Abstract)

Parul Chakrabarti

pp. 241-244

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Signal Analysis of Pathogens' Genomic Sequences (Abstract)

pp. 245-250

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CglE's Role in Meningitic E. coli K1 Infection and Energy Metabolism Defined by Bioinformatic and Molecular Characterization (Abstract)

pp. 251-255

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Bioinformatics Analysis of the Envelope Glycoprotein and Construction of Infectious RNA Transcripts of Dengue Virus (Abstract)

pp. 256-260

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B-cell Epitope Mapping of Helicobacter pylori Neutrophil-Activating Protein (Abstract)

Chibing Gong

Yan Li

Ming Li

Jun Luo

Hong Cao

Min Long

pp. 261-264

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Game Theory Models for Infectious Diseases (Abstract)

Sheng-He Huang

Wensheng Zhou

Ambrose Jong

Huan Qi

pp. 265-269

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Role of Monocytes and Macrophages in Pathogenesis of SARS (Abstract)

Li He

pp. 270-273

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Principal Component Analysis of Infectomes in Human Brain Endothelial Cell after C. neoformans Infection (Abstract)

pp. 274-277

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Genomic Survey of Cryptococcus neoformans-Induced Gene Expression Profiling in Human Brain Micro-Vascular Endothelial Cells (Abstract)

pp. 278-281

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Mathematical Modeling of Dynamic Host Responses to HBV Infection (Abstract)

Changjiang Long

Huan Qi

Sheng-He Huang

pp. 282-288

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Phylogenetics and Biomolecule Discovery

Classification of LARGE-liked GlcNAc-Transferases of Dictyostelium discoideum by Phylogenetic Analysis (Abstract)

pp. 289-293

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Molecular Mimicry between SARS Coronavirus Spike Protein and Human Protein (Abstract)

pp. 294-298

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Phylogenetic Analysisof Trichomonade Xylosyltransferases (Abstract)

pp. 299-304

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Crystal Structures and Computer Screened Inhibitors of Helicobacter pylori Undecaprenyl Pyrophosphate Synthase (Abstract)

pp. 305-310

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Structural Rationale for Differential Carbohydrate Recognition by Barley and Fibrobacter succinogenes 1,3-1,4-ß-D-Glucanases (Abstract)

Li-Chu Tsai

pp. 311-316

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Unsupervised Learning in Spectral Genome Analysis (Abstract)

pp. 317-321

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Evolution by Communication: A Revision of Sperm-Mediated Gene Transfer (Abstract)

Andrew V. Kuznetsov

pp. 322-326

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Molecular Simulation

A Web-Based Interactive Monitoring System for Molecular Simulation (Abstract)

Jun Lee

pp. 327-334

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Classifier Research

A Fast Heuristic Algorithm for Similarity Search in Large DNA Databases (Abstract)

pp. 335-340

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Genetic Algorithm Approach to Construction of Specialized Multi-Classifier Systems: Application to DNA Analysis (Abstract)

pp. 341-346

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Classification of Unbalanced Medical Data with Weighted Regularized Least Squares (Abstract)

Nguyen Ha Vo

Yonggwan Won

pp. 347-352

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Knowledge Discovery via Incremental Learning (Abstract)

pp. 353-360

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Cancer Screening

A Proposed Decision-Support System for (Renal) Cancer Imaging (Abstract)

pp. 361-366

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Early Detection of Prostate Cancer with Classifier Ensembles (Abstract)

pp. 367-372

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Apply GM(h,N) Model to Analyze the Influence Factor in Cervical Cancer Screening (Abstract)

pp. 373-378

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Mammography Phantom Studies Using 3D Electrical Impedance Tomography with Numerical Forward Solver (Abstract)

Umer Zeeshan Ijaz

Bong Seok Kim

Tzu-Jen Kao

Anil Kumar Khambampati

Sin Kim

pp. 379-383

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Textural Classification of Mammographic Parenchymal Patterns with the SONNET Self-Organizing Neural Network (Abstract)

Daniel Howard

Simon C. Roberts

pp. 384-389

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Initial Exploitation of the SONNET Derived Taxonomy of Mammographic Parenchymal Patterns (Abstract)

pp. 390-395

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Computer-Aided Diagnosis of Cross-Institutional Mammograms Using Support Vector Machines with Feature Elimination (Abstract)

pp. 396-402

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Rough Sets for Bioscience

Biologically-Inspired Adaptive Learning: A Near Set Approach (Abstract)

pp. 403-408

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Evaluation of a Dominance-Based Rough Set Approach to Interface Design (Abstract)

pp. 409-416

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Rough Set Based Information Retrieval from Argumentative Data Points in Weblogs (Abstract)

Sea Woo Kim

Chin-Wan Chung

pp. 417-424

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On the Use of Rough Sets for Artefact Extraction from EEG Datasets (Abstract)

Kenneth Revett

pp. 425-430

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Approximation Degrees in Decision Reduct-Based MRI Segmentation (Abstract)

Sebastian Widz

Dominik Slezak

pp. 431-436

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Rough Sets and Few-Objects-Many-Attributes Problem: The Case Study of Analysis of Gene Expression Data Sets (Abstract)

Dominik Slezak

pp. 437-442

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Neuroscience

Measurement and Analysis of "Yes" and "No" Responses by Auditory Stimuli Questions in Human EEG (Abstract)

pp. 443-448

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Determination of Effects of Different Music on Frontal Muscle by Using EMG Signal (Abstract)

Sadik Kara

Pinar Özel

pp. 449-452

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A Neurostimulator Design for Long-term Animal Experiments (Abstract)

pp. 453-457

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Learning to Decode Instantaneous Cognitive States from Brain Images (Abstract)

Rafael Ramirez

Enric Cecilla

pp. 458-464

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Computational Anatomy

Hippocampus Shape-Space Analysis of Clinically Depressed, High Risk, and Control Populations (Abstract)

pp. 465-469

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Brain Differences Visualized in the Blind Using Tensor Manifold Statistics and Diffusion Tensor Imaging (Abstract)

pp. 470-476

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Validation of Alternating Kernel Mixture Method Based Segmentation of the Human Brain (Abstract)

pp. 477-481

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Mapping Genetic Influences on Brain Shape Using Multi-Atlas Fluid Image Alignment (Abstract)

pp. 482-492

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Biomedical Image Analysis

A Fast and Robust Approach to Liver Nodule Detection in MR Images (Abstract)

pp. 493-497

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The Defect Detection Using Human Visual System and Wavelet Transform in TFT-LCD Image (Abstract)

pp. 498-503

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Joint Reconstruction and Registration Using Level Sets: Application to the Computer-Aided Ablation of Atrial Fibrillation (Abstract)

pp. 504-507

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Parametric Reconstruction of Boundaries and Surfaces for Medical Imaging (Abstract)

Joseph Kolibal

Daniel Howard

pp. 508-511

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Mohammad Mynuddin Gani Mazumder

A Conformal Mapping Approach for Shoe Last Design (Abstract)

Sikyung Kim

Se Jin Park

pp. 512-518

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Haptics

Quantitative Analysis of Colonoscopy Skills Using the KAIST-Ewha Colonoscopy Simulator II (Abstract)

pp. 519-524

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Haptic Rendering of Drilling into Femur Bone with Graded Stiffness (Abstract)

pp. 525-530

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A Pilot Study of a Thermal Display Using a Miniature Tactor for Upper Extremity Prosthesis (Abstract)

pp. 531-536

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A Miniature Tactor Design for Upper Extremity Prosthesis (Abstract)

Keehoon Kim

J. Edward Colgate

Michael A. Peshkin

Julio J. Santos-Munné

Alex Makhlin

pp. 537-542

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Design and Applications of a Pen-Like Haptic Interface with Texture and Vibrotactile Display (Abstract)

pp. 543-548

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An Efficient Soft Tissue Characterization Method for Haptic Rendering of Soft Tissue Deformation in Medical Simulation (Abstract)

Bummo Ahn

Jung Kim

pp. 549-553

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Discrimination of Virtual Environments Under Visual and Haptic Rendering Delays (Abstract)

In Lee

Seungmoon Choi

pp. 554-562

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Biomedicine

Modeling of Light Propagation through Biological Tissues: A Novel Approach (Abstract)

Chintha C. Handapangoda

pp. 563-566

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Micro-Injection System for Localized Drug Delivery Using Embedded Solid Chemical Propellant (Abstract)

pp. 567-571

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Bio-Inspired Microsystem for Robust Genetic Assay Recognition (Abstract)

Jaw-Chyng Lue

Wai-Chi Fang

pp. 572-677

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Analysis and Optimization of a Wireless Communication System for an Ingestable Sensor Microsystem (Abstract)

Nizamettin Aydin

Tughrul Arslan

pp. 578-581

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Fractal Analysis of Umbilical Artery Doppler Signals from Normal Pregnant Subject Using Hurst Exponent (Abstract)

pp. 582-586

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Calculation of Joint Reaction Forces in the Equine Distal Forelimb during Walking and Trotting (Abstract)

pp. 587-590

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Towards a Mobile and Context-Aware Technology Based Healthcare System (Abstract)

pp. 591-594

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Ontology-Based Semi-automatic Construction of Bayesian Network Models for Diagnosing Diseases in E-health Applications (Abstract)

Beom-Jun Jeon

In-Young Ko

pp. 595-602

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Interaction with Humanoids Speech and Gaze

Articulatory Reproduction of Voices of Hearing-Impaired by a Talking Robot (Abstract)

pp. 603-608

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Speech Enhancement Using Masking of Noisy Power Estimates (Abstract)

Soojeong Lee

Soonhyob Kim

pp. 609-612

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Speech Enhancement Using Gain Function of Noisy Power Estimates and Linear Regression (Abstract)

Soojeong Lee

Soonhyob Kim

pp. 613-616

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3D Gaze Tracking and Analysis for Attentive Human Computer Interaction (Abstract)

pp. 617-621

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3D Environment Modeling and its Application to Human Robot Interaction (Abstract)

pp. 622-627

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Usability Evaluation of Humanoid-Animation Avatar with Physiological Signals (Abstract)

pp. 628-636

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Autonomous Robots and Control Theories

Bounded Incremental Real-Time Dynamic Programming (Abstract)

Changjie Fan

Xiaoping Chen

pp. 637-644

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Learning to Drive a Real Car in 20 Minutes (Abstract)

pp. 645-650

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Integrated Heterogeneous Multi-Robot System for Collaborative Navigation (Abstract)

Qining Wang

Guangming Xie

Long Wang

Ming Wu

pp. 651-656

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Study of the Beverton-Holt Equation from a Control Theory Point of View (Abstract)

pp. 657-664

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Biometrics

A Bioinformatics Based Approach to Behavioural Biometrics (Abstract)

Kenneth Revett

pp. 665-670

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Fingerprint Watermarking for H.264 Streaming Media (Abstract)

pp. 671-675

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Fingerprint Verification Based on Absolute Distance and Intelligent BPNN (Abstract)

pp. 676-681

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Neural Network Based Biometric Personal Identification (Abstract)

Rahib H. Abiyev

Koray Altunkaya

pp. 682-687

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FuzzyHash: A Secure Biometric Template Protection Technique (Abstract)

Andrew Teoh Beng Jin

Jaihie Kim

pp. 688-694

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U-City User Authentication Methods and Encryption Techniques Based on Biometric Technology (Abstract)

Youngjun Kim

Jason Kim

pp. 695-697

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A Context-Aware Statistical Ontology Approach for Adaptive Face Recognition (Abstract)

pp. 698-703

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Performance Evaluation Model for the Face Recognition System (Abstract)

pp. 704-708

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Biometric Certificate Based Biometric Digital Key Generation with Protection Mechanism (Abstract)

pp. 709-714

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Bio-Inspired Adaboost Method for Efficient Face Recognition (Abstract)

Suman Sedai

pp. 715-718

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Iris Segmentation and Verification (Abstract)

pp. 719-723

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Determining Optimal Malsburg Gabor Kernel for Efficient Non-Rigid Object Recognition (Abstract)

pp. 724-727

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Evolutionary Classifier Fusion for Optimizing Face Recognition (Abstract)

Suman Sedai

pp. 728-733

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Canonical View Synthesis for Gait Recognition (Abstract)

pp. 734-739

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Two-level Classifier Scheme for Efficient Eye Location (Abstract)

Xi Wang

Sung Kwan Kang

pp. 740-748

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Genetic and Evolutionary Computation and Heuristic Search

Fast Parallel Molecular Algorithms for DNA-Based Computation: Solving the Elliptic Curve Discrete Logarithm Problem over GF(2ⁿ) (Abstract)

Kenli Li

Shuting Zou

Jin Xu

pp. 749-752

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DNA Inspired Digital Signal Pattern Matching Algorithm (Abstract)

pp. 753-756

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An Evolutionary Approach to Speech Quality Estimation (Abstract)

Adil Raja

R. Muhammad Atif Azad

Colin Flanagan

pp. 757-760

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A Destructive Evolutionary Algorithm Process (Abstract)

Joe Sullivan

pp. 761-764

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A New Approach to Calculate the Best Context of a Tree and its Application in Defining a Constructive, Context Aware Crossover for GP (Abstract)

Hammad Majeed

pp. 765-768

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[Seeding Methods for Run Transferable Libraries] Capturing Domain Relevant Functionality through Schematic Manipulation for Genetic Programming (Abstract)

pp. 769-772

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Developmental Evaluation in Genetic Programming: A Position Paper (Abstract)

pp. 773-778

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Overview of Object Detection and Image Analysis by Means of Genetic Programming Techniques (Abstract)

pp. 779-784

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Genetic Algorithm that can Dynamically Change Number of Individuals and Accuracy (Abstract)

Akihiko Tsukahara

Akinori Kanasugi

pp. 785-789

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Adaptive Classifier Selection System Using Context-driven Genetic Algorithm (Abstract)

Xi Wang

pp. 790-794

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Maintaining Diversity in EDAs for Real-Valued Optimisation Problems (Abstract)

David Wallin

pp. 795-800

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Interactive Fuzzy Multi-objective Ant Colony Optimization with Linguistically Quantified Decision Functions for Flexible Job Shop Scheduling Problems (Abstract)

pp. 801-806

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An Efficient Global Optimization of Neural Networks by Using Hybrid Method (Abstract)

Yong-Hyun Cho

Seong-Jun Hong

pp. 807-812

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Evolution Analysis of Homogenous Source Code and its Application to Plagiarism Detection (Abstract)

pp. 813-818

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NEFRL: A New Neuro-Fuzzy System for Episodic Reinforcement Learning Tasks (Abstract)

Babak Behsaz

Reza Safabakhsh

pp. 819-826

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Bionetics

Adaptive Data Dissemination in Sensor Networks Using WPDD (Abstract)

pp. 827-832

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Noise-Assisted Control in Information Networks (Abstract)

pp. 833-838

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Molecular Communication—A Biochemically-Engineered Communication System (Abstract)

pp. 839-844

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Design of Bio-inspired Fault-tolerant Adaptive Routing Based on Enzymatic Feedback Control in the Cell: Towards Averaging Load Balance in the Network (Abstract)

pp. 845-850

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Leveraging Biologically-inspired Mobile Agents Supporting Composite Needs of Reliability and Timeliness in Sensor Applications (Abstract)

Pruet Boonma

Qi Han

Junichi Suzuki

pp. 851-860

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Aquacenter Research

Implementation of an Aquatic Plant Information Bank (Abstract)

JinKyu Park

Eenjun Hwang

pp. 861-866

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Intelligent Navigation of Autonomous Underwater Vehicles for Cage Aquafarm Surveillance (Abstract)

pp. 867-871

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IT Convergence Application System for Eco Aquafarm (Abstract)

pp. 872-877

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Fish Disease Diagnosis System Based on Image Processing of Pathogens' Microscopic Images (Abstract)

pp. 878-883

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Environmental Sensor Data Visualization for Aquafarm Monitoring (Abstract)

pp. 884-888

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Design of Environment Monitoring System for Aquaculture Farms (Abstract)

pp. 889-893

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Computer Simulation Framework for Flatfish Aquaculture (Abstract)

pp. 894-899

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Fish Schooling Behavior Simulator for Cyber Aquarium (Abstract)

Eung Kon Kim

Jong Chan Kim

pp. 900-903

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Back Matter

Author Index (PDF)

pp. 904-907