CSDL - Proceedings E

Title Page i (PDF)

pp. i

Title Page iii (PDF)

pp. iii

pp. iv

Table of Contents (PDF)

pp. v-xvii

Editorial Message: First Workshop on Advances in High-Performance E-Science Middleware and Applications (PDF)

pp. xviii-xix

Overview to the PRAGMA Workshop on eScience Highlights (PDF)

pp. xx-xxi

Conference Organizers (PDF)

pp. xxii

Program Committee (PDF)

pp. xxiii-xxiv

Sponsors (PDF)

pp. xxv

A Web Services Architecture for Visualization (Abstract)

pp. 1-7

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SLA-Driven Semantically-Enhanced Dynamic Resource Allocator for Virtualized Service Providers (Abstract)

Goiri

pp. 8-15

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Grid-Enabled Instrument Representation and Reservation (Abstract)

Constantinos Kotsokalis

pp. 16-22

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Forecasting Duration Intervals of Scientific Workflow Activities Based on Time-Series Patterns (Abstract)

Ke Liu

pp. 23-30

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Estimating Resource Needs for Time-Constrained Workflows (Abstract)

pp. 31-38

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Provenance in Dynamically Adjusted and Partitioned Workflows (Abstract)

Daniel Goodman

pp. 39-46

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Service Oriented Utility Grid for 3-Dimentional Topographic Visualization from Satellite Images (Abstract)

pp. 47-54

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Soundness and Niceness as Correctness Criteria for Grid Workflows (Abstract)

pp. 55-62

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Lowering the Barriers to Cancer Imaging (Abstract)

pp. 63-70

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WOOL: A Workflow Programming Language (Abstract)

pp. 71-78

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Re-thinking Grid Security Architecture (Abstract)

pp. 79-86

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Secure, Performance-Oriented Data Management for nanoCMOS Electronics (Abstract)

G. Roy

S. Roy

G. Stewart

J. Watt

A. Asenov

pp. 87-94

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Detecting Communities in Science Blogs (Abstract)

Christina K. Pikas

pp. 95-102

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User Friendly Management of Workflow Results: From Provenance Information to Grid Logical File Names (Abstract)

Tristan Glatard

Silvia D. Olabarriaga

pp. 103-110

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Scalable Semantics (Abstract)

pp. 111-118

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QoS-Based Web Service Composition Accommodating Inter-service Dependencies Using Minimal-Conflict Hill-Climbing Repair Genetic Algorithm (Abstract)

Lifeng Ai

Maolin Tang

pp. 119-126

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End-to-End eScience: Integrating Workflow, Query, Visualization, and Provenance at an Ocean Observatory (Abstract)

pp. 127-134

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Towards an Acoustic Environmental Observatory (Abstract)

pp. 135-142

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Sensor Metadata Management and Its Application in Collaborative Environmental Research (Abstract)

pp. 143-150

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Reducing Time-to-Solution Using Distributed High-Throughput Mega-Workflows - Experiences from SCEC CyberShake (Abstract)

pp. 151-158

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BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment (Abstract)

Sun Kim

pp. 159-165

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A Distributed Algorithm for Determining the Provenance of Data (Abstract)

Paul T. Groth

pp. 166-173

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VO-enabled Service Harmonization in the GEO Grid (Abstract)

pp. 174-181

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myExperiment: Defining the Social Virtual Research Environment (Abstract)

pp. 182-189

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Chandrika Sivaramakrishnan

An Extensible, Scalable Architecture for Managing Bioinformatics Data and Analyses (Abstract)

Anuj R. Shah

Mudita Singhal

Tara D. Gibson

Katrina M. Waters

Ian Gorton

pp. 190-197

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Classification of Different Approaches for e-Science Applications in Next Generation Computing Infrastructures (Abstract)

pp. 198-205

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Characterizing User-Level Network Virtualization: Performance, Overheads and Limits (Abstract)

Maurício Tsugawa

José A. B. Fortes

pp. 206-213

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MRPGA: An Extension of MapReduce for Parallelizing Genetic Algorithms (Abstract)

pp. 214-221

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CloudBLAST: Combining MapReduce and Virtualization on Distributed Resources for Bioinformatics Applications (Abstract)

pp. 222-229

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A Library for Asynchronous Concurrent Service Orchestration (Abstract)

Wei Lu

Dennis Gannon

pp. 230-237

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Meandre: Semantic-Driven Data-Intensive Flows in the Clouds (Abstract)

pp. 238-245

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ARCHER (Abstract)

pp. 246-252

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Distributed Replica-Exchange Simulations on Production Environments Using SAGA and Migol (Abstract)

pp. 253-260

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Parallel Processing of Large-Scale XML-Based Application Documents on Multi-core Architectures with PiXiMaL (Abstract)

Michael R. Head

Madhusudhan Govindaraju

pp. 261-268

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The Grid Browser: Improving Usability in Service-Oriented Grids by Automatically Generating Clients and Handling Data Transfers (Abstract)

pp. 269-276

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MapReduce for Data Intensive Scientific Analyses (Abstract)

pp. 277-284

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SWARM: Scheduling Large-Scale Jobs over the Loosely-Coupled HPC Clusters (Abstract)

Sangmi Lee Pallickara

Marlon Pierce

pp. 285-292

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Experiences from Cyberinfrastructure Development for Multi-user Remote Instrumentation (Abstract)

pp. 293-300

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Contextualization: Providing One-Click Virtual Clusters (Abstract)

Katarzyna Keahey

Tim Freeman

pp. 301-308

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The Rails Toolkit (Abstract)

pp. 309-316

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The Trident Scientific Workflow Workbench (Abstract)

pp. 317-318

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Stereoscopic Visualization of Scientific and Medical Content for Education: Seeing in 3D (Abstract)

Albert William

pp. 319-320

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Biocep, Towards a Federative, Collaborative, User-Centric, Grid-Enabled and Cloud-Ready Computational Open Platform (Abstract)

Karim Chine

pp. 321-322

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Gridbus Work?ow Management System on Clouds and Global Grids (Abstract)

pp. 323-324

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The Indiana Clinical Translational Sciences Institute HUB (Abstract)

William K. Barnett

pp. 325-326

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Mendeley - A Last.fm For Research? (Abstract)

Victor Henning

Jan Reichelt

pp. 327-328

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Support for Cooperative Experiments in VL-e: From Scientific Workflows to Knowledge Sharing (Abstract)

pp. 329-330

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Research Intelligence: (Abstract)

Jerry Sheehan

pp. 331

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Open Grid Computing Environment's Workflow Suite for E-Science Projects (Abstract)

pp. 332-333

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The SURA-Microsoft Biomedical and Geosciences Research Demo (Abstract)

pp. 334

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SALSA Project: Parallel Data Mining of GIS, Web, Medical, Physics, Chemical, and Biology Data (Abstract)

pp. 335-336

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Application Hosting Services in a Virtual Organization That Supports Multiple Grid Environments (Abstract)

Hitohide Usami

Hiroyuki Kanazawa

pp. 337-338

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The HDF5-iRODS Module: A Data Grid System for Object Level Access (Abstract)

Peter Cao

Mike Wan

pp. 339-340

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An Interactive Multimedia Web Editor (Abstract)

pp. 341-342

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OGSA-DAI: Middleware for Data Integration: Selected Applications (Abstract)

Elias Theocharopoulos

pp. 343

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End-to-End Cyberinfrastructure for Real-Time Enviornmental Decision Support (Abstract)

pp. 344-345

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Concrete Partial Evaluation in Ruby (Abstract)

Andrew Keep

Arun Chauhan

pp. 346-347

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Producing and Sharing Regional Weather Forecast Data for e-Science Applications (Abstract)

Marcus Carvalho

Eliane Ara

Renato O. Fernandes

Rodolfo L. B. Nóbrega

pp. 348-349

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A Wireless Non-invasive Real-Time Monitoring Blood Lactate Test for a Moving Subject (Abstract)

Birhan Payli

Arjan Durresi

pp. 350-351

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Scientific Computing Autonomic Reliability Framework (Abstract)

pp. 352-353

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Data Visualization and Analysis of CIC Graduate Student TeraGrid Resource Usage (Abstract)

Erik Johnson

Elaine Wah

pp. 354-355

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A Model for Communication in Clusters of Multi-core Machines (Abstract)

Christine Task

Arun Chauhan

pp. 356-357

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Compile-Time Disambiguation of MATLAB Types through Concrete Interpretation with Automatic Run-Time Fallback (Abstract)

Chun-Yu Shei

Arun Chauhan

pp. 358-359

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EUAsiaGrid (Abstract)

Alex Voss

pp. 360-361

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Visualization and Analysis of GPU Summer School Applicants and Participants (Abstract)

pp. 362-363

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Immune System Modeling with Infer.NET (Abstract)

pp. 364-365

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Observatory Middleware Framework (Abstract)

pp. 366-367

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Imagery Data Mining: The IDEC Experiment (Abstract)

pp. 368-369

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OGSA-DWC: A Middleware for Deep Web Crawling Using the Grid (Abstract)

pp. 370-371

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Integration of Avian Influenza Virus Information Sources for Korea e-Science (Abstract)

pp. 372-373

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An Algorithm in SwinDeW-C for Scheduling Transaction-Intensive Cost-Constrained Cloud Workflows (Abstract)

Ke Liu

Hai Jin

pp. 374-375

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Digital Video Retrieval via Mobile Devices (Abstract)

pp. 376-377

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AirScope: A Micro-Scale Urban Air Quality Management System (Abstract)

pp. 378-379

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Adding Standards Based Job Submission to a Commodity Grid Broker (Abstract)

pp. 380-381

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InterNano: e-Science for the Nanomanufacturing Community (Abstract)

Rebecca Reznik-Zellen

pp. 382-383

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GENI Meta-Operations Center (Abstract)

Jon-Paul Herron

pp. 384-385

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Virtual Sensors in a Web 2.0 Virtual Watershed (Abstract)

pp. 386-387

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Mobile e-Lab: A Mobile Personalized Virtual Research Computing Environment (Abstract)

pp. 388-389

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Cluster-Based Hybrid Scheduling Mechanisms for Workflow Applications on the Grid (Abstract)

pp. 390-391

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Parameter Estimation Using Scientific Workflows (Abstract)

pp. 392-393

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BXGrid: A Data Repository and Workflow Abstraction for Biometrics Research (Abstract)

pp. 394-395

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Replica Aware Reliable File Transfer Service for the Data Grid (Abstract)

pp. 396-397

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Using Mediation to Achieve Provenance Interoperability (Extended Abstract) (Abstract)

pp. 398-399

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Enabling Data Transport between Web Services through alternative protocols and Streaming (Abstract)

pp. 400-401

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Monitoring and Managing E-Science Cyber-Infrastructures: A Case Study (Abstract)

pp. 402-403

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Shared Genomics: Accessible High Performance Computing for Genomic Medical Research (Abstract)

pp. 404-405

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Metamodel-Based Generation of WSRF-Compliant SOA for Collaborative Cancer Research (Abstract)

pp. 406-407

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Cyberinfrastructure Collaboration for Distributed Digital Preservation (Abstract)

pp. 408-409

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Exploiting Latent I/O Asynchrony in Petascale Science Applications (Abstract)

pp. 410-411

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An Overview of the Granules Runtime for Cloud Computing (Abstract)

pp. 412-413

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MAEviz: Bridging the Time-from-Discovery Gap between Seismic Research and Decision Making (Abstract)

Christopher M. Navarro

pp. 414-415

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Advanced Information Delivery System for the Abraham Lincoln Writings (Abstract)

pp. 416-417

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A Hybrid Peer-to-Peer and Grid Job Scheduling System for Teaming Up Desktop Resources with Computer Clusters to Perform Turbulence Simulations (Abstract)

pp. 418-419

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Rule-Based Classification Systems for Informatics (Abstract)

B. Krishnamurthy

T. Malik

S. Stamatis

V. Venkatasubramanian

J. Caruthers

pp. 420-421

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BioMashups: The New World of Exploratory Bioinformatics? (Abstract)

pp. 422-423

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Provenance Collection in an Industry Biochemical Discovery Cyberinfrastructure (Abstract)

Bin Cao

pp. 424-425

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Communicating Security Assertions over the GridFTP Control Channel (Abstract)

pp. 426-427

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Schema-Independent and Schema-Friendly Scientific Metadata Management (Abstract)

Scott Jensen

Beth Plale

pp. 428-429

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Storage Space - Advance Reservation and Scheduling (Abstract)

Sree Lakshmi D. Gudreddi

Silvia Figueira

pp. 430-431

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Hydrological Sensor Web for the South Esk Catchment in the Tasmanian state of Australia (Abstract)

Siddeswara Mayura Guru

pp. 432-433

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On Building Scientific Workflow Systems for Data Management in the Cloud (Abstract)

pp. 434-435

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Web 2.0-Based Semantic Data, Document and Event Management Environment (Abstract)

pp. 436-437

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Digital Agriculture: Learning to Feed a Hungry World (Abstract)

pp. 438-439

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Advanced Information Systems for Archival Appraisals of Contemporary Documents (Abstract)

pp. 440-441

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Scientific Mashups: Runtime-Configurable Data Product Ensembles (Abstract)

Harrison Green-Fishback

Bill Howe

pp. 442-443

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Publishing Active Workflows to Problem-Focused Web Spaces (Abstract)

pp. 444-445

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Coupling Computers to Living Cells for Automated Knowledge Extraction (Abstract)

Daniel E. Callahan

pp. 446-447

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Knowledge Spaces and Scientific Data (Abstract)

pp. 448-449

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Network and Physical Upgrade of EV Wilkins Computing Center to Support a 600 Node Grid Used with Remote Sensing of SAR Polar DATA (Abstract)

pp. 450-451

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Bio-Sense: A System for Supporting Sharing and Exploration in Bioinformatics Using Semantic Web Services (Abstract)

Kai Xu

pp. 452-453

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Semantic Framework for Free-Form Search of Grid Resources (Abstract)

Chaitali Gupta

Madhusudhan Govindaraju

pp. 454-455

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Riding the Geoscience Cyberinfrastructure Wave of Data: Real Time Data Use in Education Workshop (Abstract)

Beth Plale

Bin Cao

pp. 456

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MAEviz: Exploring Earthquake Risk Reduction Strategies (Abstract)

Christopher M. Navarro

pp. 457

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Online CReSIS and Polar Resources for Education (Abstract)

Ryan Bowman

Linda Hayden

pp. 458

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The Potential of Grid-Enabled Learning for High Impact Weather with LEAD (Abstract)

Sepideh Yalda

Richard Clark

pp. 459

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Southeastern Universities Research Association (SURA) Coastal Ocean Observing and Prediction (SCOOP) (Abstract)

Sandra L. Harper

pp. 460

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An Educator's Perspective on Cyberinfrastructure (Abstract)

pp. 461

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Good Partners are Hard to Find: The Search for and Selection of Collaborators in the Health Sciences (Abstract)

pp. 462-467

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The Challenges of Distributed Scientific Collaboration among Top Scientists--A Case Study (Abstract)

Airong Luo

pp. 468-469

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The Power of Cyberinfrastructure in Building Grassroots Networks: A History of the Pacific Rim Applications and Grid Middleware Assembly (PRAGMA), and Lessons Learned in Developing Global Communities (Abstract)

Peter Arzberger

Grace S. Hong

pp. 470

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Trials and Tribulations of the UK National Grid Service (Abstract)

Gillian M. Sinclair

pp. 471-474

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Why Good Software Sometimes Dies (Abstract)

Neil P. Chue Hong

Alex Voss

pp. 475-477

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Towards Making BOINC and EGEE Interoperable (Abstract)

pp. 478-484

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Cross-Domain Middlewares Interoperability for Distributed Aircraft Design Optimization (Abstract)

pp. 485-492

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Interoperability between ARC and gLite - Understanding the Grid-Job Life Cycle (Abstract)

M. Gr

D. Qing

pp. 493-500

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Grid Information System Interoperability: The Need For A Common Information Model (Abstract)

pp. 501-507

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Modeling and Evaluating Interoperable Grid Systems (Abstract)

pp. 508-515

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Integration of GridFTP as an Alternative File Transfer in UNICORE for the DEISA Infrastructure (Abstract)

pp. 516-523

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Functional Analysis and Architecture for Interoperable and DVO-Speci?c Grid (Abstract)

Timo Baur

pp. 524-531

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A Cyber Environment for Engineering Cyber Education (Abstract)

pp. 532-539

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Optimized Rendering for a Three-Dimensional Videoconferencing System (Abstract)

pp. 540-546

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Identification of a Specific Inhibitor for the Dual-Specificity Enzyme SSH-2 via Docking Experiments on the Grid (Abstract)

pp. 547-554

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Virtual Screening for SHP-2 Specific Inhibitors Using Grid Computing (Abstract)

pp. 555-562

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Implement the Grid Workflow Scheduling for Data Intensive Applications with CSF4 (Abstract)

pp. 563-569

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Interfacing SCMSWeb with Condor-G (Abstract)

Somsak Sriprayoonsakul

pp. 570-575

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PRIUS: An Educational Framework on PRAGMA Fostering Globally-Leading Researchers in Integrated Sciences (Abstract)

pp. 576-581

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Services Oriented Architecture for Managing Workflows of Avian Flu Grid (Abstract)

pp. 582-589

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Grid Interoperability: An Experiment in Bridging Grid Islands (Abstract)

pp. 590-596

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Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems (Abstract)

Luiz M.R. Gadelha Jr

Marta Mattoso

pp. 597-602

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StrainInfo.net Web Services: Enabling Microbiologic Workflows Such as Phylogenetic Tree Building and Biomarker Comparison (Abstract)

pp. 603-607

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Resource Provisioning Options for Large-Scale Scientific Workflows (Abstract)

Gideon Juve

Ewa Deelman

pp. 608-613

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Build Grid Enabled Scientific Workflows Using gRAVI and Taverna (Abstract)

Wei Tan

pp. 614-619

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Lattice QCD Workflows: A Case Study (Abstract)

Hui Jin

pp. 620-625

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Capturing Workflow Event Data for Monitoring, Performance Analysis, and Management of Scientific Workflows (Abstract)

pp. 626-633

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A High-Level Distributed Execution Framework for Scientific Workflows (Abstract)

pp. 634-639

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On the Use of Cloud Computing for Scientific Workflows (Abstract)

pp. 640-645

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MRGIS: A MapReduce-Enabled High Performance Workflow System for GIS (Abstract)

pp. 646-651

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An Automatic Drug Discovery Workflow Generation Tool Using Semantic Web Technologies (Abstract)

Xiao Dong

David Wild

pp. 652-657

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SQMD: Architecture for Scalable, Distributed Database System Built on Virtual Private Servers (Abstract)

pp. 658-665

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DrugScreener-G: Towards an Integrated Environment for Grid-Enabled Large-Scale Virtual Screening and Drug Discovery (Abstract)

pp. 666-671

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An Adaptive XML Parser for Developing High-Performance Web Services (Abstract)

Wei Zhang

Robert A. van Engelen

pp. 672-679

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DAGDA: Data Arrangement for the Grid and Distributed Applications (Abstract)

pp. 680-687

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Analysis of Cache Performance for Processing XML-Based Application Data on Multi-core Processors (Abstract)

Rajdeep Bhowmik

Madhusudhan Govindaraju

pp. 688-694

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Parallel Multidimensional Scaling Performance on Multicore Systems (Abstract)

Seung-Hee Bae

pp. 695-702

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Coordinated Co-allocation Scheduling on Heterogeneous Clusters of SMPs (Abstract)

Ivan Rodero

Julita Corbalan

pp. 703-710

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Resource Availability Prediction for Improved Grid Scheduling (Abstract)

Brent Rood

Michael J. Lewis

pp. 711-718

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Towards Computational Abstractions over a RESTful Architecture (Abstract)

David De Roure

pp. 719-722

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Using Small Abstractions to Program Large Distributed Systems (Abstract)

Li Yu

pp. 723-724

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The Problem Solving Environments of TeraGrid, Science Gateways, and the Intersection of the Two (Abstract)

pp. 725-734

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Jylab Meets Eclipse: Integrating PSEs with Multicomponent Platforms (Abstract)

Giorgos Kollias

Konstantinos Georgiou

Efstratios Gallopoulos

pp. 735-742

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Studies of Agent Composition Model of PSE-Bio Workflow (Abstract)

pp. 743-748

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e-Science Workbench: an Approach to Build Domain-Specific Problem Solving Environments (Abstract)

Dongsoo Han

Soonwook Hwang

pp. 749-755

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A Distributed Linkage Method for a Large Amount of Event Data (Abstract)

pp. 756-761

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A Login Shell for Computing Grid (Abstract)

Xiaoning Wang

Jian Lin

Yongqiang Zou

Li Zha

pp. 762-769

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A Grid-Enabled Problem Solving Environment for Supporting Collaborative Aerodynamic Engineering Process (Abstract)

pp. 770-777

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Synergies between Grid and Repository Technologies - A Methodical Mapping (Abstract)

Andreas Aschenbrenner

Tobias Blanke

Mark Hedges

pp. 778-781

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Rethinking Metadata Creation and Management in a Data-Driven Research World (Abstract)

Andrew Treloar

Ross Wilkinson

pp. 782-789

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A Wiki for Collaboration and Publication in Research (Abstract)

pp. 790-794

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Author Index (PDF)

pp. 795-802

Publisher's Information (PDF)

pp. 804