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2009 WRI World Congress on Computer Science and Information Engineering
Neural Network with K-Means Clustering via PCA for Gene Expression Profile Analysis
Los Angeles, California USA
March 31-April 02
ISBN: 978-0-7695-3507-4
| ASCII Text | x | ||
| Thomas C. Chen, Sandeep Sanga, Tina Y. Chou, Vittorio Cristini, Mary E. Edgerton, "Neural Network with K-Means Clustering via PCA for Gene Expression Profile Analysis," Computer Science and Information Engineering, World Congress on, vol. 3, pp. 670-673, 2009 WRI World Congress on Computer Science and Information Engineering, 2009. | |||
| BibTex | x | ||
| @article{ 10.1109/CSIE.2009.945, author = {Thomas C. Chen and Sandeep Sanga and Tina Y. Chou and Vittorio Cristini and Mary E. Edgerton}, title = {Neural Network with K-Means Clustering via PCA for Gene Expression Profile Analysis}, journal ={Computer Science and Information Engineering, World Congress on}, volume = {3}, year = {2009}, isbn = {978-0-7695-3507-4}, pages = {670-673}, doi = {http://doi.ieeecomputersociety.org/10.1109/CSIE.2009.945}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - Computer Science and Information Engineering, World Congress on TI - Neural Network with K-Means Clustering via PCA for Gene Expression Profile Analysis SN - 978-0-7695-3507-4 SP670 EP673 A1 - Thomas C. Chen, A1 - Sandeep Sanga, A1 - Tina Y. Chou, A1 - Vittorio Cristini, A1 - Mary E. Edgerton, PY - 2009 KW - gene expression KW - lung cancer KW - clustering analysis KW - k-mean KW - PCA KW - neural network VL - 3 JA - Computer Science and Information Engineering, World Congress on ER - | |||
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/CSIE.2009.945
Gene expression microarray data are highly multidimensional and contain high level of noise. Most of these data involve multiple heterogeneous dynamic patterns depending on disease under study. In addition, possible errors might also be introduced along data collection path if multiple sites and methods are used. In this paper a combined data mining method, i.e., neural network with K-means clustering via principal component analysis (PCA), is proposed to address the data complexity issues when conducting gene expression profile mining. The proposed method was tested on gene expression profile in lung adenocarcinoma, collected from multiple cancer research centers, for survival prediction and risk assessment. The results from the proposed method were analyzed, and further studies for future improvement of the proposed method were also recommended
Index Terms:
gene expression, lung cancer, clustering analysis, k-mean, PCA, neural network
Citation:
Thomas C. Chen, Sandeep Sanga, Tina Y. Chou, Vittorio Cristini, Mary E. Edgerton, "Neural Network with K-Means Clustering via PCA for Gene Expression Profile Analysis," csie, vol. 3, pp.670-673, 2009 WRI World Congress on Computer Science and Information Engineering, 2009
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