Subscribe
2005 IEEE Computational Systems Bioinformatics Conference - Workshops (2005)
Stanford, California
Aug. 8, 2005 to Aug. 11, 2005
ISBN: 0-7695-2442-7
TABLE OF CONTENTS
Cover
Biomedical Research
Lu-yong Wang , Siemens Corporate Research
Amit Chakraborty , Siemens Corporate Research
Dorin Comaniciu , Siemens Corporate Research
pp. 9-10
Shawn Martin , Sandia National Laboratories
Jean-Loup Faulon , Sandia National Laboratories
Derick Weis , Tennessee Technological University
Donald Visco , Tennessee Technological University
pp. 11-16
Cellular Multicelluar Systems
Ruiqi Wang , The University of Tokyo
Luonan Chen , Osaka Sangyo University
pp. 17-18
Preetam Ghosh , The University of Texas at Arlington
Samik Ghosh , The University of Texas at Arlington
Kalyan Basu , The University of Texas at Arlington
Sajal Das , The University of Texas at Arlington
pp. 19-22
Comporative Genomics
Natalia Khuri , Carnegie Institution, DPB
Nikhila S Rao , San Jose State University
pp. 23-24
Jake K. Byrnes , University of Chicago
Wen-Hsiung Li , University of Chicago
pp. 25-26
Jeong-Hyeon Choi , Indiana University
Amit Saple , Indiana University
Zhiping Wang , Indiana University
Jason Lee , Indiana University
Kwangmin Choi , Indiana University
pp. 27-30
Data Mining
Jialin Zheng , University of Nebraska Medical Center
Zhengxin Chen , University of Nebraska at Omaha
Yong Shi , Graduate University of the Chinese Academy of Sciences
pp. 31-32
Heather Trumbower , UCSC Genome Bioinformatics Group
Jennifer Jackson , UCSC Genome Bioinformatics Group
pp. 33-34
Judith A. Blake , The Jackson Laboratory
Jim A. Kadin , The Jackson Laboratory
Donnie Qi , The Jackson Laboratory
Martin Ringwald , The Jackson Laboratory
Jannan E. Eppig , The Jackson Laboratory
Carol J. Bult , The Jackson Laboratory
pp. 37-38
Yadu B. Tewari , Biotechnology Division, NIST, 100 Bureau Drive
Henry Rodriguez , Biotechnology Division, NIST, 100 Bureau Drive
Robert N. Goldberg , Biotechnology Division, NIST, 100 Bureau Drive
pp. 39-40
Eveleen Darby , University of Houston
Tezeswari Nettimi , University of Houston
Shilpa Kodali , University of Houston
Liwen Shih , University of Houston
pp. 43-44
Jason Lee , School of Informatics,Indiana University
pp. 45-46
Eric G. Stephan , Pacific Northwest National Laboratory
Kyle R. Klicker , Pacific Northwest National Laboratory
Mudita Singhal , Pacific Northwest National Laboratory
Heidi J. Sofia , Pacific Northwest National Laboratory
pp. 47-50
Evolution and Phylogenetics
Daniel Barker , University of Reading, Whiteknights
Mark Pagel , University of Reading, Whiteknights
pp. 51-52
Guohui Lin , University of Alberta
Xiu-Feng Wan , University of Missouri
Xiaomeng Wu , University of Alberta
pp. 53-54
Gang Wu , University of Alberta
Jia-Huai You , University of Alberta
Guohui Lin , University of Alberta
pp. 55-56
Nicholas D. Pattengale , University of New Mexico
Bernard M.E. Moret , University of New Mexico
pp. 57-58
M. Tarawneh , University of Sydney, NSW 2006, Australia
C. Wang , University of Sydney, NSW 2006, Australia
R. P. Brent , Australian National University, Canberra, ACT 0200, Australia
pp. 59-60
Mahesh M. Kulkarni , University of New Mexico
Bernard M.E. Moret , University of New Mexico
pp. 61-62
Noppadon Khiripet , National Electronics and Computer Technology Center, Thailand
pp. 63-64
Krister M. Swenson , University of New Mexico
Nicholas D. Pattengale , University of New Mexico
Bernard M.E. Moret , University of New Mexico
pp. 65-68
Functional Genomics
Victor Olman , Computational Biology, Institute, Oak Ridge National Laboratory
Phuongan. Dam , University of Georgia at Athens
pp. 69-70
T.A. Knijnenburg , Delft University of Technology
M.J.T. Reinders , Delft University of Technology
J.M. Daran , Kluyver Centre for Genomics of Industrial Fermentation Delft The Netherlands
P. Daran-Lapujade , Kluyver Centre for Genomics of Industrial Fermentation Delft The Netherlands
L.F.A. Wessels , Department of Pathology The Netherlands Cancer Institute, The Netherlands
pp. 71-72
Richard J. Carter , Hewlett-Packard Labs
Peter Markstein , Hewlett-Packard Labs
Anne B.S. Giersch , Harvard University
pp. 75-76
Rahul Rahul Singh , Department of Computer Science,San Francisco State University
Alexander Vaughan , Department of Biology,San Francisco State University
Megumi Fuse , Department of Biology,San Francisco State University
pp. 77-78
Allan Lo , Institute of Information Science, Academia Sinica, Taiwan
Chin-Chin Lin , Institute of Information Science, Academia Sinica, Taiwan
Chia-Yu Su , Institute of Information Science, Academia Sinica, Taiwan
Wen-Lian Hsu , Institute of Information Science, Academia Sinica, Taiwan
pp. 79-82
High Performance Computing
Guiliang Feng , University of Louisiana at Lafayette
Yujiang Shan , Southern Arkansas University
pp. 85-88
Microarray Analysis
Frizo A.L. Janssens , Department of Electrical Engineering ESAT-SCD,Belgium
Frank De Smet , Department of Electrical Engineering ESAT-SCD,Belgium
Kathleen Marchal , Department of Electrical Engineering ESAT-SCD,Belgium
Ignace B. Vergote , Division of Gynecologic Oncology,University Hospitals Leuven, Belgium
Johan A.K. Suykens , Department of Electrical Engineering ESAT-SCD, Belgium
Bart L.R. De Moor , Department of Electrical Engineering ESAT-SCD, Belgium
pp. 89-90
Jiaxiong Pi , University of Nebraska at Omaha, Omaha
Yong Shi , Graduate University of the Chinese Academy of Sciences
Zhengxin Chen , University of Nebraska at Omaha
pp. 91-92
Dick de Ridder , Delft University of Technology
Frank J.T. Staal , Department of Immunology, Erasmus MC, University Medical Center, Netherlands
Jacques J.M. van Dongen , Department of Immunology, Erasmus MC, University Medical Center, Netherlands
pp. 93-94
Mari L. Salmi , University of Texas at Austin
Stephen C. Stout , University of Texas at Austin
Stanley J. Roux , University of Texas at Austin
pp. 95-96
Ammaiappan Balasubramanian , Siemens Corporate Research
Amit Chakraborty , Siemens Corporate Research
Dorin Comaniciu , Siemens Corporate Research
pp. 97-98
Carmen Lai , Delft University of Technology
Marcel Reinders , The Netherlands Cancer Institute, Amsterdam
pp. 99-100
Manohar Kollegal , GE Global Research, Bangalore, India
Richard Shippy , GE Healthcare Bio-Sciences, Chandler, Arizona, US
Timothy Sendera , GE Healthcare Bio-Sciences, Chandler, Arizona, US
pp. 101-102
F. Tirado , Computer Architecture Department. Universidad Complutense de Madrid.
A. Pascual-Montano , Computer Architecture Department. Universidad Complutense de Madrid
J.M. Carazo , National Center of Biotechnology. CNB-CSIC. Universidad Aut?noma de Madrid
R.D. Pascual-Marqui , The KEY Institute for Brain-Mind Research. Lenggstr, Switzerland
pp. 103-104
R. Harrison , Department of Computer Science, Georgia State University, Atlanta
Yi Pan , Department of Computer Science, Georgia State University, Atlanta
Bernard Chen , Department of Computer Science, Georgia State University, Atlanta
pp. 105-108
Rong Zhang , Computer Science Department Dartmouth College
Fei Xiong , Computer Science Department Dartmouth College
Fillia Makedon , Computer Science Department Dartmouth College
Li Shen , Computer and Information Science Department University of Massachusetts Dartmouth
Bruce Hettleman , Department of Cardiology Dartmouth Medical School
Heng Huang , Computer Science Department Dartmouth College
pp. 110-111
Other
Robert John Coulier , Undergraduate, California State University at San Bernardino
pp. 117
Sumedha Gholba , Arizona State University
Herve Menager , Arizona State University
pp. 118-119
Thomas C. Hudson , University of North Carolina at Wilmington
Ann E. Stapleton , University of North Carolina at Wilmington
Amy M. Curley , University of North Carolina at Wilmington
pp. 120-121
Christopher Wilks , San Jose State University
Sami Khuri , San Jose State University
pp. 122-123
Bill Martin , Attotron Biotechnologies Corporation
Carl E. McMillan , Attotron Biotechnologies Corporation
Robert M. Horton , Attotron Biotechnologies Corporation
pp. 124-125
Rahul Parthe , West Virginia University, Morgantown
Yong Zhang , West Virginia University, Morgantown
pp. 128-132
Sudeshna Adak , GE Global Research, Bangalore, India
Brion Sarachan , GE Global Research, Niskayuna,NY
William FitzHugh , Celera Genomics
Jeremy Heil , Celera Genomics
Reeti Tandon , GE Global Research, Bangalore, India
pp. 133-134
Kaushal Parekh , Arizona State University, Tempe
Maria-Esther Vidal , Universidad Simon Bol?var,Venezuela
Marelis Cardenas , Universidad Simon Bol?var,Venezuela
Natalia Marquez , Universidad Simon Bol?var,Venezuela
Zoe Lacroix , Arizona State University
pp. 137-138
Alexander Churkin , Ben-Gurion University
Ornit Elgad , Ben-Gurion University
Oshrat Petgho , Ben-Gurion University
Danny Barash , Ben-Gurion University
pp. 139-141
Christina Thaller , Baylor College of Medicine
Musodiq Bello , The University of Houston
Wah Chiu , Baylor College of Medicine
James Carson , Baylor College of Medicine,
Joe Warren , Rice University
Ioannis Kakadiaris , The University of Houston
Gregor Eichele , Baylor College of Medicine
pp. 141-142
Pathways Networks System Biology
Hai Hu , Windber Research Institute
Xiang Guo , Windber Research Institute
Craig D. Shriver , Walter Reed Army Medical Center
pp. 149-150
Seung Soo Park , Ewha Womans University, Korea
Min Su Lee , Ewha Womans University, Korea
pp. 151-154
Linda Briesemeister , SRI International, Menlo Park,CA
Steven Eker , SRI International, Menlo Park,CA
Merrill Knapp , SRI International, Menlo Park,CA
Andy Poggio , SRI International, Menlo Park,CA
Carolyn Talcott , SRI International, Menlo Park,CA
Keith Laderoute , SRI International, Menlo Park,CA
pp. 155-156
Kuen-Pin Wu , Institute of Information Science and Academia Sinica
Wen-Ting Lin , Institute of Information Science and Academia Sinica
Yi-Hwa Yian , Institute of Information Science and Academia Sinica
Yet-Ran Chen , Institute of Chemistry, Academia Sinica
Yu-Ju Chen , Institute of Chemistry, Academia Sinica
Ting-Yi Sung , Institute of Information Science and Academia Sinica
Wen-Lian Hsu , Institute of Information Science, Academia Sinica
pp. 157-158
Corey Powell , University of California, Santa Cruz
Joshua Stuart , University of California, Santa Cruz
pp. 159-160
K.-H. Chiam , Bioinformatics Institute, Singapore
Gunaretnam Rajagopal , Bioinformatics Institute, Singapore
pp. 164-165
L.F.A. Wessels , Delft University of Technology
S.D.C. Martes , Delft University of Technology
R.J.P. van Berlo , Delft University of Technology
pp. 166-167
Samik Ghosh , University of Texas at Arlington
Preetam Ghosh , University of Texas at Arlington
Kalyan Basu , University of Texas at Arlington
Sajal Das , University of Texas at Arlington
pp. 170-171
B.L.T. Vaes , Univ. of Nijmegen
E.P. van Someren , Delft Univ. of Technology
A.M. Sijbers , Target Discovery Unit N.V. Organon
K.J. Dechering , Target Discovery Unit N.V. Organon
M.J.T. Reinders , Delft Univ. of Technology
pp. 172-173
Matt Weirauch , University of California at Santa Cruz
Josh Stuart , University of California at Santa Cruz
pp. 178-179
A. Yuryev , Ariadne Genomics, Inc.
N. Daraselia , Ariadne Genomics, Inc.
I. Mazo , Ariadne Genomics, Inc.
pp. 180-184
Pattern Recognition
Ramana M. Gosukonda , Fort Valley State University,GA
Masoud Naghedolfeizi , Fort Valley State University,GA
Johnny Carter , Fort Valley State University,GA
pp. 187-188
Alexander Churbanov , University of Nebraska at Omaha
pp. 189-190
David J. Schneider , USDA Agricultural Research Service
Samuel W. Cartinhour , USDA Agricultural Research Service
Christopher R. Myers , Cornell Theory Center, Cornell University
Monica Vencato , Department of Plant Pathology Cornell University
Alan Collmer , Department of Plant Pathology Cornell University
pp. 191-192
Klara Kedem , Department of Computer Science, Ben-Gurion University
Michal Shapira , Department of Life Science, Ben-Gurion University
Adaya N. Cohen , Department of Computer Science, Ben-Gurion University
pp. 193-195
Nicholas DelRaso , Air Force Research Laboratory
Mark P. Westrick , Air Force Research Laboratory
Gary L. Jahns , BAE Systems Advanced Information Technologies
Nicholas V. Reo , Wright State University
Timothy R. Zacharewski , Michigan State University, Lansing
pp. 195-198
Promoter Analysis
Gordon Robertson , British Columbia Cancer Agency
Misha Bilenky , British Columbia Cancer Agency
Tamara Astakhova , British Columbia Cancer Agency
Obi L. Griffith , British Columbia Cancer Agency
Maik Hassel , British Columbia Cancer Agency
Keven Lin , British Columbia Cancer Agency
Stephen Montgomery , British Columbia Cancer Agency
Mehrdad Oveisi , British Columbia Cancer Agency
Erin Pleasance , British Columbia Cancer Agency
Neil Robertson , British Columbia Cancer Agency
Monica C. Sleumer , British Columbia Cancer Agency
Kevin Teague , British Columbia Cancer Agency
Richard Varhol , British Columbia Cancer Agency
Maggie Zhang , British Columbia Cancer Agency
Steven Jones , British Columbia Cancer Agency
pp. 203-206
Protiend Structure Analysis
Cunxi Wang , Pioneer Hi-bred International Inc.
Zhenglin Hou , Pioneer Hi-bred International Inc.
pp. 207-208
Hae-Jin Hu , Department of Computer Science,Georgia State University, Atlanta
Phang C. Tai , Department of Biology,Georgia State University, Atlanta
Robert Harrison , Department of Biology,Georgia State University, Atlanta
Jieyue He , Southeast University, Nanjing
Yi Pan , Department of Computer Science, Georgia State University, Atlanta
pp. 213-214
Gulsah Altum , Georgia State University, Atlanta
Robert Harrison , Georgia State University, Atlanta
Phang C. Tai , Georgia State University, Atlanta
Yi Pan , Georgia State University, Atlanta
pp. 215-216
Bo Yan , Bioinformatics, University of Georgia, Athens, GA
Juntao Guo , Bioinformatics, University of Georgia, Athens, GA
Chindo Hicks , Bioinformatics, University of Georgia, Athens, GA
Peng Wang , Bioinformatics, University of Georgia, Athens, GA
pp. 217-
Hsin-Nan Lin , Institute of Information Science, Academia Sinica, Taipei
Kuen-Pin Wu , Institute of Information Science, Academia Sinica, Taipei
Jia-Ming Chang , Institute of Information Science, Academia Sinica, Taipei
Ting-Yi Sung , Institute of Information Science, Academia Sinica, Taipei
Wen-Lian Hsu , Institute of Information Science, Academia Sinica, Taipei
pp. 218-219
Amandeep S. Sidhu , University of Technology Sydney
Tharam S. Dillon , University of Technology Sydney
Elizabeth Chang , School of Information Systems, Curtin University of Technology, Perth, Australia
pp. 220-221
Yogesh A. Girdhar , Dept. of Computer Science,Rensselaer Polytechnic Institute
Srinivas Akella , Dept. of Computer Science,Rensselaer Polytechnic Institute
Srinivas Akella Srinivas Akella , Biology, Rensselaer Polytechnic Institute, Troy,
pp. 222-223
Yisheng Dong , Department of Computer Science, Southeast University, Nanjing
Bernard Chen , Department of Computer Science, Georgia State University, Atlanta
Hae-Jin Hu , Department of Computer Science, Georgia State University, Atlanta
Robert Harrison , GCC Distinguished Cancer Scholar
Phang C. Tai , Department of Biology, Georgia State University, Atlanta
Yisheng Dong , Department of Computer Science, Southeast University, Nanjing
Yi Pan , Department of Computer Science, Southeast University, Nanjing
pp. 224-227
RNAi Analysis
Sequence Alignment
Carla Correa Tavares dos Reis , Oswaldo Cruz Foundation
Rubem Mondaini , Federal University of Rio de Janeiro
pp. 239-240
Yong Beom Seo , Division of Information and Computer Engineering,,Ajou University, South Korea
Ji Hwan Song , Division of Information and Computer Engineering,,Ajou University, South Korea
Dong Soon Choi , Department of Molecular Science and Technology,,Ajou University, South Korea
Churl K. Min , Department of Molecular Science and Technology,,Ajou University, South Korea
Han Jip Kim , Department of Biological Sciences, Ajou University, South Korea
pp. 241-242
SNPs and Haplotyping
Yasuyuki Tomita , Department of Biotechnology, School of Engineering, Nagoya University
Hiroyuki Honda , Department of Biotechnology, School of Engineering, Nagoya University
Mitsuhiro Yokota , Department of Cardiovascular Genome Science, School of Medicine, Nagoya University
pp. 247-248
Masanori Baba , HuBit Genomix, Inc , Tokyo, Japan
Guijin Ji , HuBit Genomix, Inc , Tokyo, Japan
Hidenori Satoh , HuBit Genomix, Inc , Tokyo, Japan
Takashi Kido , HuBit Genomix, Inc , Tokyo, Japan
pp. 249-250
Zemin Ning , The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus
Mario Caccamo , The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus
James C. Mullikin , Genome Technology Branch/NHGRI, NIH
pp. 251-254
Synthetic Biological Systems
S. Thiberge , Princeton University
R. Weiss , Princeton University
pp. 255
Christopher Bystroff , Biology Department, Rensselaer Polytechnic Institute
Sam DeLuca , Biology Department, Rensselaer Polytechnic Institute
Carl N. McDaniel , Biology Department, Rensselaer Polytechnic Institute
pp. 260-261
Ihor Lemischka , Biology Dept, Princeton University
Ron Weiss , Engineering and Dept. of Molecular Biology, Princeton University
pp. 262
Jerome Ku , Dept. of Electrical Engineering, Princeton University
David Karig , Dept. of Electrical Engineering, Princeton University
pp. 263-266
Visualization
Xin Lin , Department of Computer Science, Kent State University
Yu-Wei Hsieh , Department of Computer Science, Kent State University
Johnnie W. Baker , Department of Computer Science, Kent State University
Boren Lin , Department of Chemistry, Kent State University
Chun-che Tsai , Department of Chemistry, Kent State University
pp. 267-268
D.T. Lee , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
Laurent Lin , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
Chin-Lin Peng , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
Shiang-Heng Chen , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
Chun-Yi Wong , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
Arthur Chun-Chieh Shih , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
Tze-Chang Shiao , Institute of Information Science and Genomics Research Center, Academia Sinica, Taiwan
pp. 269-270
Ting-Cheng Lu , California Institute for Quantitative Biomedical Research
JinHui Ding , California Institute for Quantitative Biomedical Research
Silvia N. Crivelli , California Institute for Quantitative Biomedical Research
pp. 271-272
Silvia N. Crivelli , California Institute for Quantitative Biomedical Research
Ting-Cheng Lu , California Institute for Quantitative Biomedical Research
pp. 273-274
Kay A. Robbins , Cajal Neuroscience Research Institute University of Texas at San Antonio
Li Zhao , Department of Computer Science, University of Texas at San Antonio
pp. 275-276
Workshop: Controlling Complexity
Roy Sterritt , University of Ulster, Ireland
Mike Hinchey , NASA Goddard Space Flight Center Software Engineering Laboratory
pp. 283-291
Barbara Gawronska , School of Humanities and Informatics,University of Sk?vde
Tom Ziemke , School of Humanities and Informatics,University of Sk?vde
Sten F. Andler , School of Humanities and Informatics,University of Sk?vde
Bj?rn Olsson , School of Humanities and Informatics,University of Sk?vde
Anne Persson , School of Technology and Society,University of Sk?vde
pp. 299-304
James L. Rash , NASA Goddard Space Flight Center Information Systems Division
Denis Gracanin , Virginia Tech
pp. 305-313
Ruzena Bajcsy , University of California, Berkeley
J. Mikael Eklund , University of California, Berkeley
Gregory V. Simpson , University of California, San Francisco
pp. 332-338
Workshop: BioImage data Mining and Informatics
Weibo Cai , University School of Medicine, Stanford
Xiaoyuan Chen , University School of Medicine, Stanford
pp. 340-349
Michael Liebling , Biological Imaging Center, Beckman Institute, California Institute of Technology
Mary E. Dickinson , Biological Imaging Center, Beckman Institute, California Institute of Technology
Arian Forouhar , Option of Bioengineering and Aeronautics, California Institute of Technology
Morteza Gharib , Option of Bioengineering and Aeronautics, California Institute of Technology
pp. 350
Hanchuan Peng , University of California at Berkeley
pp. 352
Tao Ju , Dept. of Computer Science, Rice University, Houston TX.
Christina Thaller , Biochemistry and Molecular Biology, Baylor College of Medicine
M. Bello , Dept. of Computer Science, University of Houston
Joe Warren , Dept. of Computer Science, Rice University, Houston TX.
Gregor Eichele , Max Planck Institute of Experimental Endocrinology, Hannover, Germany
James Carson , National Center for Macromolecular Imaging
pp. 358
Abhi Gholap , BioImagene, Inc.
Gauri Naik , BioImagene, Inc.
Aparna Joshi , BioImagene, Inc.
CVK Rao , BioImagene, Inc.
pp. 359-363
Son Tran , University of Houston
pp. 364-372
Paula Gothreaux , University of Houston
George Collins , University of Houston
Liwen Shih , University of Houston
Gerald Campbell , University of Texas Medical Branch
pp. 373
Hanchuan Peng , Lawrence Berkeley National Lab, Berkeley, CA
Damir Sudar , Lawrence Berkeley National Lab, Berkeley, CA
David Knowles , Lawrence Berkeley National Lab, Berkeley, CA
Sophie Leli?vre , Lawrence Berkeley National Lab, Berkeley, CA
pp. 374
Arnab Bhattacharya , University of California, Santa Barbara
Ambuj K. Singh , University of California, Santa Barbara
pp. 375-379
Ilya Goldberg , Laboratory of Genetics, NIH, National Institute on Aging
pp. 380
Workshop: BioSpice and Use Case
Charles Zhou , Quantum Intelligence, Inc.
Ian Oglesby , Quantum Intelligence, Inc.
Cliff Zhou , Quantum Intelligence, Inc.
pp. 391-394
Ying Zhao , Quantum Intelligence, Inc.
pp. 395-398
Author Index