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2011 IEEE International Conference on Bioinformatics and Biomedicine
Identifying Ovarian Cancer Chemotherapy Response Relevant Gene Cliques
Atlanta, Georgia USA
November 12-November 15
ISBN: 978-0-7695-4574-5
| ASCII Text | x | ||
| Yan-E Li, Juan Zhang, Bin Han, Lihua Li, "Identifying Ovarian Cancer Chemotherapy Response Relevant Gene Cliques," 2012 IEEE International Conference on Bioinformatics and Biomedicine, pp. 294-298, 2011 IEEE International Conference on Bioinformatics and Biomedicine, 2011. | |||
| BibTex | x | ||
| @article{ 10.1109/BIBM.2011.65, author = {Yan-E Li and Juan Zhang and Bin Han and Lihua Li}, title = {Identifying Ovarian Cancer Chemotherapy Response Relevant Gene Cliques}, journal ={2012 IEEE International Conference on Bioinformatics and Biomedicine}, volume = {0}, year = {2011}, isbn = {978-0-7695-4574-5}, pages = {294-298}, doi = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2011.65}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - 2012 IEEE International Conference on Bioinformatics and Biomedicine TI - Identifying Ovarian Cancer Chemotherapy Response Relevant Gene Cliques SN - 978-0-7695-4574-5 SP294 EP298 A1 - Yan-E Li, A1 - Juan Zhang, A1 - Bin Han, A1 - Lihua Li, PY - 2011 KW - Liquid Association KW - gene clique VL - 0 JA - 2012 IEEE International Conference on Bioinformatics and Biomedicine ER - | |||
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/BIBM.2011.65
Operation with adjuvant chemotherapy is still the principal means to treat Ovarian cancer. Identifying Ovarian Cancer Chemotherapy Response (OCCR) relevant genes and describe their interactions is thus an important issue. However the problems of high dimensional micro array data and the scarcity of biological priors make building a complete OCCR biological network intractable. To this end, we combine liquid association (LA) algorithm with biological knowledgebase searching to identify OCCR relevant gene clique and describe their interactions. Rather than trying to build a gene network, our approach focus on identifying OCCR relevant gene cliques and then patching them up. Statistical analysis and biological validation show that the identified gene cliques play important roles in tumor genesis, immunity, cells proliferation and migration etc and significantly OCCR relevant. More importantly, the connection of independent gene cliques is established and the associations of genes are described. Methodologically, the proposed method avoids the problem of complex computation, relies only on available biological priors and provides a novel way to build gene network.
Index Terms:
Liquid Association, gene clique
Citation:
Yan-E Li, Juan Zhang, Bin Han, Lihua Li, "Identifying Ovarian Cancer Chemotherapy Response Relevant Gene Cliques," bibm, pp.294-298, 2011 IEEE International Conference on Bioinformatics and Biomedicine, 2011
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