CSDL - Proceedings B

Title Page i (PDF)

pp. i

Title Page iii (PDF)

pp. iii

pp. iv

Table of Contents (PDF)

pp. v-xi

Preface (PDF)

pp. xii-xiii

Conference Committees (PDF)

pp. xiv-xv

Program Committee (PDF)

pp. xvi-xix

Additional Referees (PDF)

pp. xx

Sequence-Based Prediction of Protein Folding Rates Using Contacts, Secondary Structures and Support Vector Machines (Abstract)

Dong Xu

pp. 3-8

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Bioinformatics Pipeline for Identification of Binding Motifs of Flexible Protein Tethers (Abstract)

Jeffrey L. Ram

Yi Lu

pp. 9-14

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Extremal Optimization for the Protein Structure Alignment (Abstract)

pp. 15-19

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Biological Feature Incorporated Alignment for Cross Species Analysis on Carbohydrate Binding Modules (Abstract)

Margaret Dah-Tsyr Chang

Wei-I Chou

Hao-Teng Chang

pp. 20-25

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Accurate Prediction of Stability Changes in Bacteriophage T4 Lysozyme upon Single Amino Acid Replacements (Abstract)

pp. 26-30

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High Throughput Short Read Alignment via Bi-directional BWT (Abstract)

pp. 31-36

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Neural Grammar Networks in QSAR Chemistry (Abstract)

Eddie Y. T. Ma

Stefan C. Kremer

pp. 37-42

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Predicting Yeast Synthetic Lethal Genetic Interactions Using Protein Domains (Abstract)

Bo Li

Feng Luo

pp. 43-47

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Detection of Gene Orthology Based on Protein-Protein Interaction Networks (Abstract)

Fadi Towfic

M. Heather West Greenlee

Vasant Honavar

pp. 48-53

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Assessment of Gene Annotation Accuracy by Inferring Transcripts from RNA-Seq (Abstract)

pp. 54-59

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An Algorithm for the Discovery of Phenotype Related Metabolic Pathways (Abstract)

Matthew C. Schmidt

Nagiza F. Samatova

pp. 60-65

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Protein Long Disordered Region Prediction Based on Profile-Level Disorder Propensities and Position-Specific Scoring Matrixes (Abstract)

Bin Liu

Lei Lin

Xiaolong Wang

Xuan Wang

Yi Shen

pp. 66-69

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ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties (Abstract)

pp. 70-73

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3D Rotation Invariant Features for the Characterization of Molecular Density Maps (Abstract)

Min Xu

Shihua Zhang

Frank Alber

pp. 74-78

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Fast Motif Selection for Biological Sequences (Abstract)

Pavel Kuksa

Vladimir Pavlovic

pp. 79-82

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Inexact Local Alignment Search over Suffix Arrays (Abstract)

Mohammadreza Ghodsi

Mihai Pop

pp. 83-87

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Derivation of Transcriptional Regulatory Relationships by Partial Least Squares Regression (Abstract)

pp. 88-91

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Statistical Methods for Detecting Latent Periodicity in Biological Sequences: Solving a Problem of Small-Size Samples (Abstract)

pp. 92-96

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Modeling Protein Interaction Networks with Answer Set Programming (Abstract)

pp. 99-104

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Restructuring Protein Interaction Networks to Reveal Structural Hubs and Functional Organizations (Abstract)

Young-Rae Cho

Aidong Zhang

pp. 105-110

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High Functional Coherence in k-Partite Protein Cliques of Protein Interaction Networks (Abstract)

pp. 111-117

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Exploratory Analysis of Protein Translation Regulatory Networks Using Hierarchical Random Graphs (Abstract)

pp. 118-123

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Qualitative Motif Detection in Gene Regulatory Networks (Abstract)

pp. 124-129

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Towards Reliable Isoform Quantification Using RNA-Seq Data (Abstract)

Brian E Howard

Steffen Heber

pp. 130-135

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Identifying Gene Signatures from Cancer Progression Data Using Ordinal Analysis (Abstract)

Yoon Soo Pyon

Jing Li

pp. 136-141

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Side Effect Prediction Using Cooperative Pathways (Abstract)

pp. 142-147

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DASSO-MB: Detection of Epistatic Interactions in Genome-Wide Association Studies Using Markov Blankets (Abstract)

pp. 148-153

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Disease Classification Based on the Activities of Interacting Molecular Modules with Condition-Responsive Correlation (Abstract)

pp. 154-159

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A Multi-task Feature Selection Filter for Microarray Classification (Abstract)

Liang Lan

Slobodan Vucetic

pp. 160-165

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A 2-Stage Approach for Inferring Gene Regulatory Networks Using Dynamic Bayesian Networks (Abstract)

Akther Shermin

Mehmet A. Orgun

pp. 166-169

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Microarray Biclustering with Crowding Based MOACO (Abstract)

pp. 170-173

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Using Gene Pair Combinations to Improve the Accuracy of the PAM Classifier (Abstract)

pp. 174-177

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The Analysis of Arabidopsis thaliana Circadian Network Based on Non-stationary DBNs Approach with Flexible Time Lag Choosing Mechanism (Abstract)

Yi Jia

Jun Huan

pp. 178-181

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Biofilm Image Segmentation Using Optimal Multi-level Thresholding (Abstract)

pp. 185-190

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Model-Based ECG Denoising Using Empirical Mode Decomposition (Abstract)

Yan Lu

Jingyu Yan

Yeung Yam

pp. 191-196

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Extraction of Respiratory Rate from Impedance Signal Measured on Arm: A Portable Respiratory Rate Measurement Device (Abstract)

pp. 197-202

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Integrated Analysis of Pharmacokinetic, Clinical, and SNP Microarray Data Using Projection onto the Most Interesting Statistical Evidence with Adaptive Permutation Testing (Abstract)

pp. 203-209

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Building a Standards-Based and Collaborative E-Prescribing Tool (Abstract)

pp. 210-215

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RIC: Ranking with Interaction Chains and Its Application in Computational Clinical Proteomics Studies (Abstract)

Jieun Jeong

Jake Y. Chen

pp. 216-221

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Towards Identification of Human Disease Phenotype-Genotype Association via a Network-Module Based Method (Abstract)

pp. 222-227

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Multiagent Approach for Identifying Cancer Biomarkers (Abstract)

pp. 228-233

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Feature Extraction for Pulse Waveform in Traditional Chinese Medicine by Hemodynamic Analysis (Abstract)

Guo Rui

pp. 234-238

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Differential Predictive Modeling for Racial Disparities in Breast Cancer (Abstract)

pp. 239-245

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Identifying MiRNA and Imaging Features Associated with Metastasis of Lung Cancer to the Brain (Abstract)

pp. 246-251

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Evolution of the Probability of an MPM (Multiple Primary Malignancy) after a First Colon Tumor (Abstract)

pp. 252-256

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An Efficient Noise Cancellation Technique to Remove Noise from the ECG Signal Using Normalized Signed Regressor LMS Algorithm (Abstract)

Mohammad Zia Ur Rahman

Rafi Ahamed Shaik

D. V. Rama Koti Reddy

pp. 257-260

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Using Forearm Electromyograms to Classify Hand Gestures (Abstract)

Gene Shuman

pp. 261-264

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A Device for Detecting and Counting Bites of Food Taken by a Person during Eating (Abstract)

pp. 265-268

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Nonlinear Dynamical and Entropic Complexity Measures as Indicators of Nonstationarities in Short-Term ECG Signals (Abstract)

Rafal Ladysz

pp. 269-278

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Clinical Attribute Network for Chronic Lymphocytic Leukemia (Abstract)

pp. 279-282

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Hospital Admission Prediction Using Pre-hospital Variables (Abstract)

pp. 283-286

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Hybrid SVM for Multiclass Arrhythmia Classification (Abstract)

pp. 287-290

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Traumatic Pelvic Injury Outcome Prediction by Extracting Features from Relevant Medical Records and X-Ray Images (Abstract)

pp. 291-294

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A Fast, Semi-automatic Brain Structure Segmentation Algorithm for Magnetic Resonance Imaging (Abstract)

Kevin Karsch

Qing He

Ye Duan

pp. 297-302

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Pancreas Modeling from IVGTT Data Using a Deterministic Optimal Search Method (Abstract)

Dayu Lv

Bill Goodwine

pp. 303-308

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GemAffinity: A Scoring Function for Predicting Binding Affinity and Virtual Screening (Abstract)

pp. 309-314

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A Novel Deterministic-Stochastic Crossover Method for Simulating Biochemical Networks (Abstract)

Amit Sabnis

Robert W. Harrison

pp. 315-320

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GAM: Genomic Assemblies Merger: A Graph Based Method to Integrate Different Assemblies (Abstract)

pp. 321-326

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Activated Germinal-Center B Cells Undergo Directed Migration (Abstract)

pp. 327-331

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Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures (Abstract)

pp. 332-337

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Determination of Major Lineages of Mycobacterium tuberculosis Complex Using Mycobacterial Interspersed Repetitive Units (Abstract)

pp. 338-343

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Towards a Better Ranking for Biomedical Information Retrieval Using Context (Abstract)

pp. 344-349

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Ensemble Learning Based on Active Example Selection for Solving Imbalanced Data Problem in Biomedical Data (Abstract)

pp. 350-355

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Application of Kernel Functions for Accurate Similarity Search in Large Chemical Databases (Abstract)

pp. 356-361

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A Hybrid Method to Discover and Rank Cross-Disciplinary Associations (Abstract)

pp. 362-365

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Biomedical Relationship Extraction from Literature Based on Bio-semantic Token Subsequences (Abstract)

Jayasimha R. Katukuri

Ying Xie

Vijay V. Raghavan

pp. 366-370

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A Protein-Protein Interaction Prediction Method Embracing Intra-protein Domain Cohesion Information (Abstract)

pp. 371-374

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BioCLink: A Probabilistic Approach for Improving Genomics Search with Citation Links (Abstract)

pp. 375-378

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DNAjig: A New Approach for Building DNA Nanostructures (Abstract)

pp. 379-383

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Enhancing Pathway Based Analysis Using Different Weighting Schemes (Abstract)

pp. 384-387

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Analyzing DNA Copy Number Changes Using Fused Margin Regression (Abstract)

pp. 388-391

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Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research (Abstract)

Lang Li

pp. 392-395

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Applying Feature Coupling Generalization for Protein-Protein Interaction Extraction (Abstract)

pp. 396-400

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Real-Time Non-rigid Registration of Medical Images on a Cooperative Parallel Architecture (Abstract)

pp. 401-404

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A Generalized Multivariate Approach for Correlation-Based Pattern Discovery from Replicated Molecular Profiling Data (Abstract)

pp. 405-410

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A Genetic Association Study between Breast Cancer and Osteoporosis Using Transitive Text Mining (Abstract)

Bi-Hua Cheng

Harsha Gopal Goud Vaka

Snehasis Mukhopadhyay

pp. 411-414

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Bacterial Foraging Optimization Algorithm Integrating Tabu Search for Motif Discovery (Abstract)

Linlin Shao

Yuehui Chen

pp. 415-418

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Discovering Temporal Associations among Significant Changes in Gene Expression (Abstract)

pp. 419-423

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Bayesian Classifier for Anchored Protein Sorting Discovery (Abstract)

Fan Zhang

Jianjun Hu

pp. 424-428

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Author Index (PDF)

pp. 429-433

Publisher's Information (PDF)

pp. 434