CSDL - Proceedings B

Title Page i (PDF)

pp. i

Title Page iii (PDF)

pp. iii

pp. iv

Table of Contents (PDF)

pp. v-xi

Preface (PDF)

pp. xii

Organization (PDF)

pp. xiii-xv

Program Committee (PDF)

pp. xvi-xix

Keynotes (PDF)

pp. xx-xxvi

Functional Proteomic Pattern Identification under Low Dose Ionizing Radiation (Abstract)

pp. 3-8

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bcnQL: A Query Language for Biochemical Network (Abstract)

Hong Yang

Rajshekhar Sunderraman

Hao Tian

pp. 11-16

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A Mixture Language Model for Class-Attribute Mining from Biomedical Literature Digital Library (Abstract)

pp. 17-22

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Vasileios Megalooikonomou

Analysis of Multiplex Gene Expression Maps Obtained by Voxelation (Abstract)

Li An

pp. 23-28

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Energy Profile and Secondary Structure Impact shRNA Efficacy (Abstract)

Hong Zhou

Xiao Zeng

pp. 31-36

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Meta Analysis of Microarray Data Using Gene Regulation Pathways (Abstract)

pp. 37-42

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Frequency Sorting Method for Spectral Analysis of DNA Sequences (Abstract)

pp. 43-50

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Knowledge Discovery in Clinical Performance of Cancer Patients (Abstract)

pp. 51-58

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Discovering Frequent Patterns of Functional Associations in Protein Interaction Networks for Function Prediction (Abstract)

Young-Rae Cho

Aidong Zhang

pp. 59-65

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Using Gene Ontology to Enhance Effectiveness of Similarity Measures for Microarray Data (Abstract)

Zheng Chen

Jian Tang

pp. 66-71

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Correlations of Length Distributions between Non-coding and Coding Sequences of Arabidopsis thaliana (Abstract)

pp. 72-77

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Identifying Interface Elements Implied in Protein-Protein Interactions Using Statistical Tests and Frequent Item Sets (Abstract)

Christine Martin

Antoine Cornuéjols

pp. 78-83

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Mining Fuzzy Association Patterns in Gene Expression Data for Gene Function Prediction (Abstract)

Patrick C. H. Ma

Keith C. C. Chan

pp. 84-89

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Applying Clustering and Phylogeny Analysis to Study Dinoflagellates Based on Sterol Composition (Abstract)

Cen Li

pp. 90-97

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Protein Sequence Motif Super-Rule-Tree (SRT) Structure Constructed by Hybrid Hierarchical K-Means Clustering Algorithm (Abstract)

Bernard Chen

Jieyue He

Steven Pellicer

Yi Pan

pp. 98-103

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Using Global Sequence Similarity to Enhance Biological Sequence Labeling (Abstract)

pp. 104-111

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Robust Composite Interval Mapping for QTL Analysis by Minimum beta-Divergence Method (Abstract)

Md. Nurul Haque Mollah

Shinto Eguchi

pp. 115-120

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Effectiveness of Applying Codon Usage Bias for Translational Initiation Sites Prediction (Abstract)

pp. 121-126

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Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information (Abstract)

pp. 129-134

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Invariance Kernel of Biological Regulatory Networks (Abstract)

Jamil Ahmad

Olivier Roux

pp. 135-140

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Synthetic Gene Design with a Large Number of Hidden Stop Codons (Abstract)

pp. 141-146

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Fast Alignments of Metabolic Networks (Abstract)

pp. 147-152

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Heart of the Matter: Discovering the Consensus of Multiple Clustering Results (Abstract)

Alex Kosorukoff

Saurabh Sinha

pp. 155-162

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Probe Design for Compressive Sensing DNA Microarrays (Abstract)

Wei Dai

pp. 163-169

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Detecting Significantly Expressed Genes from Their Time-Course Expression Profiles and Its Validation (Abstract)

Fang-Xiang Wu

pp. 170-175

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Exploring Core/Periphery Structures in Protein Interaction Networks Provides Structure-Property Relation Insights (Abstract)

Thomas Grindinger

Feng Luo

Xiu-Feng Wan

Richard H. Scheuermann

pp. 179-186

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Protein-Protein Interaction Prediction and Assessment from Model Organisms (Abstract)

Xiaotong Lin

Mei Liu

Xue-wen Chen

pp. 187-192

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Towards Site-Based Protein Functional Annotations (Abstract)

Seak Fei Lei

Jun Huan

pp. 193-198

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Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing Motifs (Abstract)

pp. 199-206

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Discrimination of Insoluble-Carbohydrate Binding Proteins and Their Binding Sites Using a 3D Motif Detection Method (Abstract)

pp. 207-213

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On the Role of Local Matching for Efficient Semi-supervised Protein Sequence Classification (Abstract)

pp. 217-222

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Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques (Abstract)

Niranjan Nagarajan

Carl Kingsford

pp. 223-230

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Exploring Alternative Splicing Features Using Support Vector Machines (Abstract)

pp. 231-238

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New Approaches to Compare Phylogenetic Search Heuristics (Abstract)

pp. 239-245

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Biological Data Outlier Detection Based on Kullback-Leibler Divergence (Abstract)

pp. 249-254

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Multi-way Association Extraction from Biological Text Documents Using Hyper-Graphs (Abstract)

Snehasis Mukhopadhyay

Mathew Palakal

Kalyan Maddu

pp. 257-262

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Figure Classification in Biomedical Literature towards Figure Mining (Abstract)

pp. 263-269

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Editing Bayesian Networks: A New Approach for Combining Prior Knowledge and Gene Expression Measurements for Researching Diseases (Abstract)

pp. 273-277

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Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic Profiles (Abstract)

pp. 278-283

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Towards the Mental Health Ontology (Abstract)

pp. 284-288

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Predicting Protective Linear B-Cell Epitopes Using Evolutionary Information (Abstract)

pp. 289-292

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PhyQL: A Web-Based Phylogenetic Visual Query Engine (Abstract)

pp. 295-298

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A Changing Window Approach to Exploring Gene Expression Patterns (Abstract)

pp. 301-304

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Comparing and Clustering Flow Cytometry Data (Abstract)

Lin Liu

pp. 305-309

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Feature Selection for Tandem Mass Spectrum Quality Assessment (Abstract)

pp. 310-313

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Integrative Protein Function Transfer Using Factor Graphs and Heterogeneous Data Sources (Abstract)

pp. 314-318

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A Graph Mining Algorithm for Classifying Chemical Compounds (Abstract)

Winnie W. M. Lam

Keith C. C. Chan

pp. 321-324

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Protein-Protein Interaction Network Alignment by Quantitative Simulation (Abstract)

pp. 325-328

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Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological Clock (Abstract)

Peng Yu

Xi Chen

David Z. Pan

Andrew D. Ellington

pp. 329-334

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Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South Korea (Abstract)

pp. 335-338

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Reconstruction of Regulator Activity in E. coli Post-Transcription Processes (Abstract)

pp. 339-342

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A Functional Network of Yeast Genes Using Gene Ontology Information (Abstract)

pp. 343-346

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Estimating Regulatory Associations of Genomic Loci and Biological Pathways in Lymphoblastoid Cells (Abstract)

pp. 349-352

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Genome-Wide DNA-Binding Specificity of PIL5, a Arabidopsis Basic Helix-Loop-Helix (bHLH) Transcription Factor (Abstract)

pp. 353-356

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Partial Order-Based Bayesian Network Learning Algorithm for Estimating Gene Networks (Abstract)

pp. 357-360

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Multi-objective Particle Swarm Optimization Biclustering of Microarray Data (Abstract)

pp. 363-366

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Functional Annotation from Meta-analysis of Microarray Datasets (Abstract)

Gyan P. Srivastava

Jing Qiu

Dong Xu

pp. 367-371

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Improvement of Survival Prediction from Gene Expression Profiles by Mining of Prior Knowledge (Abstract)

Siyuan Ren

Zoran Obradovic

pp. 372-375

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Lakshmi Naarayanan Ramakrishnan

Systematic Evaluation of Scaling Methods for Gene Expression Data (Abstract)

Gaurav Pandey

Michael Steinbach

Vipin Kumar

pp. 376-381

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Estimating Missing Value in Microarray Data Using Fuzzy Clustering and Gene Ontology (Abstract)

Azadeh Mohammadi

Mohammad Hossein Saraee

pp. 382-385

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Fast Gene Selection for Microarray Data Using SVM-Based Evaluation Criterion (Abstract)

pp. 386-389

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Boosting Methods for Protein Fold Recognition: An Empirical Comparison (Abstract)

Yazhene Krishnaraj

Chandan K. Reddy

pp. 393-396

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Images Based System for Surface Matching in Macromolecular Screening (Abstract)

pp. 397-401

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Structure Based Functional Analysis of Bacteriophage f1 Gene V Protein (Abstract)

pp. 402-406

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Identifying Calcium-Binding Sites with Oxygen-Carbon Shell Geometric and Chemic Criteria-A Graph-Based Approach (Abstract)

Hui Liu

Hai Deng

pp. 407-410

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Combining Hierarchical Inference in Ontologies with Heterogeneous Data Sources Improves Gene Function Prediction (Abstract)

pp. 411-416

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Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations (Abstract)

pp. 417-420

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LogCHEM: Interactive Discriminative Mining of Chemical Structure (Abstract)

pp. 421-426

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Sampling Based Meta-algorithms for Accurate Multiple Sequence Alignment (Abstract)

Vishal Thapar

Sanguthevar Rajasekaran

pp. 429-432

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Conservative, Non-conservative and Average Pairwise Statistical Significance of Local Sequence Alignment (Abstract)

Ankit Agrawal

Xiaoqiu Huang

pp. 433-436

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Genome Alignments Using MPI-LAGAN (Abstract)

pp. 437-440

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Data Integration on Multiple Data Sets (Abstract)

Tian Mi

Robert Aseltine

Sanguthevar Rajasekaran

pp. 443-446

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Multiway Clustering for Creating Biomedical Term Sets (Abstract)

pp. 449-452

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Online Biomedical Concept Annotation Using Language Model Mapping (Abstract)

pp. 453-456

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Detecting Duplicate Biological Entities Using Markov Random Field-Based Edit Distance (Abstract)

Min Song

Alex Rudniy

pp. 457-460

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Document Classification for Mining Host Pathogen Protein-Protein Interactions (Abstract)

pp. 461-466

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iProLINK: A Framework for Linking Text Mining with Ontology and Systems Biology (Abstract)

pp. 467-472

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Extracting Protein-Protein Interactions from MEDLINE Using Syntactic Roles (Abstract)

pp. 473-476

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Author Index (PDF)

pp. 477-480

Publisher's Information (PDF)

pp. 482