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2008 IEEE International Conference on Bioinformatics and Biomedicine
Online Biomedical Concept Annotation Using Language Model Mapping
November 03-November 05
ISBN: 978-0-7695-3452-7
| ASCII Text | x | ||
| Lawrence H. Reeve, Hyoil Han, Ari D. Brooks, "Online Biomedical Concept Annotation Using Language Model Mapping," 2012 IEEE International Conference on Bioinformatics and Biomedicine, pp. 453-456, 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008. | |||
| BibTex | x | ||
| @article{ 10.1109/BIBM.2008.69, author = {Lawrence H. Reeve and Hyoil Han and Ari D. Brooks}, title = {Online Biomedical Concept Annotation Using Language Model Mapping}, journal ={2012 IEEE International Conference on Bioinformatics and Biomedicine}, volume = {0}, year = {2008}, isbn = {978-0-7695-3452-7}, pages = {453-456}, doi = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2008.69}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - 2012 IEEE International Conference on Bioinformatics and Biomedicine TI - Online Biomedical Concept Annotation Using Language Model Mapping SN - 978-0-7695-3452-7 SP453 EP456 A1 - Lawrence H. Reeve, A1 - Hyoil Han, A1 - Ari D. Brooks, PY - 2008 KW - Biomedical semantic annotation KW - Concept mapping KW - Language Modeling VL - 0 JA - 2012 IEEE International Conference on Bioinformatics and Biomedicine ER - | |||
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/BIBM.2008.69
We report the results of applying language technology to the bioinformatics problem of online concept annotation of biomedical text. We extend our concept annotator, CONANN, to find biomedical concepts in using concept language models. The goal of CONANN is to improve annotation speed without losing annotation accuracy as compared to offline systems, facilitating the use of concept annotation in online environments. Intrinsic and extrinsic evaluations show accuracy competitive with a state-of-the-art biomedical text concept annotator with a speed improvement of more than four times.
Index Terms:
Biomedical semantic annotation, Concept mapping, Language Modeling
Citation:
Lawrence H. Reeve, Hyoil Han, Ari D. Brooks, "Online Biomedical Concept Annotation Using Language Model Mapping," bibm, pp.453-456, 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
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