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2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007)
Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis
Fremont, California
November 02-November 04
ISBN: 0-7695-3031-1
| ASCII Text | x | ||
| Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das, "Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis," 2012 IEEE International Conference on Bioinformatics and Biomedicine, pp. 308-316, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007), 2007. | |||
| BibTex | x | ||
| @article{ 10.1109/BIBM.2007.39, author = {Samik Ghosh and Preetam Ghosh and Kalyan Basu and Sajal K. Das}, title = {Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis}, journal ={2012 IEEE International Conference on Bioinformatics and Biomedicine}, volume = {0}, year = {2007}, isbn = {0-7695-3031-1}, pages = {308-316}, doi = {http://doi.ieeecomputersociety.org/10.1109/BIBM.2007.39}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - 2012 IEEE International Conference on Bioinformatics and Biomedicine TI - Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis SN - 0-7695-3031-1 SP308 EP316 A1 - Samik Ghosh, A1 - Preetam Ghosh, A1 - Kalyan Basu, A1 - Sajal K. Das, PY - 2007 VL - 0 JA - 2012 IEEE International Conference on Bioinformatics and Biomedicine ER - | |||
DOI Bookmark: http://doi.ieeecomputersociety.org/10.1109/BIBM.2007.39
Fluctuations in protein number (noise) caused by the stochasticity in gene expression plays a central role in the dynamic behavior of cellular pathways. Deterministic models capture average cell population behavior and are limited in their relevance in modeling stochastic deviations of gene expression in single cells. In this paper, we develop a birth and death Markov chain model to capture the discrete molecular events of transcription and translation in prokaryotic cells. We derive mathematical models for the expression `burst frequency' distribution as well as the number of protein molecules per burst. We validate our stochastic models with recent single cell experiments on the lacZ gene in Escherichia Coli. Further, we build a discrete-event stochastic simulation system to study the transient dynamics of lacZ gene expression, quantifying the role of promoters in controlling the `burstiness' of protein synthesis.
Citation:
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das, "Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis," bibm, pp.308-316, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007), 2007
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