CSDL - Proceedings B

Title Page i (PDF)

pp. i

Title Page iii (PDF)

pp. iii

pp. iv

Table of Contents (PDF)

pp. v-xi

Conference Information (PDF)

pp. xii-xvii

Mining Positional Association Super-Rules on Fixed-Size Protein Sequence Motifs (Abstract)

Bernard Chen

Sinan Kockara

pp. 1-8

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A Novel Biological Computation Method for Deriving and Resolving Discernibility Relations (Abstract)

pp. 9-14

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AESNB: Active Example Selection with Naïve Bayes Classifier for Learning from Imbalanced Biomedical Data (Abstract)

pp. 15-21

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A Human DNA Methylation Site Predictor Based on SVM (Abstract)

pp. 22-29

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Constructing Yeast Phenotypic Gene Network Using Morphological Inclusion Relations (Abstract)

Natsumi Abe

Jun Sese

pp. 30-37

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A Generic Framework of Integrating Segmentation and Registration (Abstract)

pp. 38-44

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Soft Tissue Deformation and Optimized Data Structures for Mass Spring Methods (Abstract)

pp. 45-52

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3D Reconstruction of Colon Segments from Colonoscopy Images (Abstract)

pp. 53-60

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Automatic Tumor Diagnosis for Breast Ultrasound Using 3D Sub-volume Registration (Abstract)

pp. 61-68

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Expectation Maximization driven Geodesic Active Contour with Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer Histopathology (Abstract)

Jun Xu

pp. 69-76

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The Optimization of Monascus Fermentation Process for Pigments Increment and Citrinin Reduction (Abstract)

pp. 77-83

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A Novel Approach for Automatic Number of Clusters Detection in Microarray Data Based on Consensus Clustering (Abstract)

Nguyen Xuan Vinh

Julien Epps

pp. 84-91

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Inferring Causal Relations from Multivariate Time Series: A Fast Method for Large-Scale Gene Expression Data (Abstract)

Yinyin Yuan

Chang-Tsun Li

pp. 92-99

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A Hybrid Feature Selection Method Using Gene Expression Data (Abstract)

pp. 100-106

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Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks (Abstract)

Marco Tagliasacchi

Marco Masseroli

pp. 107-114

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Online Discovery and Refinement of Novel Genes Using GeneScope (Abstract)

Hasan Jamil

J. Jesmin

pp. 115-122

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A New Method to Combine Heterogeneous Data Sources for Candidate Gene Prioritization (Abstract)

pp. 123-129

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Interaction Based Functional Clustering of Genomic Data (Abstract)

Ritesh Krishna

Chang-Tsun Li

Vicky Buchanan-Wollaston

pp. 130-137

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Alternative Feature Mapping for Heterogeneous Gene Data Classification (Abstract)

Victor C. Liang

Vincent T.Y. Ng

pp. 138-145

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Empirical Probability Functions Derived from Dihedral Angles for Protein Structure Prediction (Abstract)

pp. 146-152

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Spatial Encoding Scheme for Protein Supporting Structure Discovery (Abstract)

pp. 153-160

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A Data Mining Approach to Predicting Phylum for Microbial Organisms Using Genome-Wide Sequence Data (Abstract)

pp. 161-167

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Tri-Cluster-Tri-Scheme-Training: Exploiting Unlabeled Data for Transmembrane Segments Prediction (Abstract)

Jieyue He

R. Harrison

Phang C. Tai

Yi Pan

pp. 168-175

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A Practical Edit-Distance Model for RNA Secondary-Structure Comparison (Abstract)

Chan-Shuo Wu

Guan-Shieng Huang

pp. 176-183

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Asymptotics of Canonical RNA Secondary Structures (Abstract)

pp. 184-191

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Identifying Functional Modules Using MST-Based Weighted Gene Co-Expression Networks (Abstract)

pp. 192-199

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Generating Peptide Sequence Tags for Peptide Identification via Tandem Mass Spectrometry (Abstract)

pp. 200-207

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On the Design of Optimization Algorithms for Prediction of Molecular Interactions (Abstract)

pp. 208-215

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Data Matching for Physical Integration of Biochemical Pathway Databases (Abstract)

pp. 216-220

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Carla Claudia da Rocha Rego Monteiro

Logistic Biclustering Models for Protein Network Inference (Abstract)

Katia SIlva Guimaraes

pp. 221-227

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Algorithms Based on Density and Shared Neighbors for Functional Modules Identification in PPI Networks (Abstract)

Peng Gang Sun

Lin Gao

pp. 228-235

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Multi-Agents System to Model Cell Signalling by Using Fuzzy Cognitive Maps. Application to Computer Simulation of Multiple Myeloma (Abstract)

Vincent Rodin

Gabriel Querrec

Pascal Ballet

François-Régis Bataille

Gireg Desmeulles

Jean-François Abgrall

Jacques Tisseau

pp. 236-241

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Genetic Algorithm for the Design of Confronting Two-Pair Primers (Abstract)

pp. 242-247

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On the Hardness of the Border Length Minimization Problem (Abstract)

Vamsi Kundeti

Sanguthevar Rajasekaran

pp. 248-253

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Web Services Based Bio-signal System Leveraging Support Vector Machines (Abstract)

pp. 254-259

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RiboSW (Abstract)

pp. 260-265

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A Computational Approach to Detect CNVs Using High-throughput Sequencing (Abstract)

pp. 266-271

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Applied GM(0,N) Model in the Study of Influence Factor in Preterm Neonates (Abstract)

pp. 272-277

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Knowledge Discovery on In Vitro Fertilization Clinical Data Using Particle Swarm Optimization (Abstract)

pp. 278-283

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Exploring the Receptor-Based Virtual Screening Study of the Aromatic Substituents for the Hepatitis C Virus NS5B Polymerase by Docking and Scoring (Abstract)

pp. 284-289

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ArrayQ: Querying Microarray Expressions for Relevant Pathways (Abstract)

pp. 290-294

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Data Mining Techniques for the Identification of Genes with Expression Levels Related to Breast Cancer Prognosis (Abstract)

pp. 295-300

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The Energy Distribution Data Bank: Collecting Energy Features of Protein Molecular Structures (Abstract)

Dariusz Mrozek

Bozena Malysiak-Mrozek

Stanislaw Kozielski

Andrzej Swierniak

pp. 301-306

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Efficiency Enhancement of Protein Folding for Complete Molecular Simulation via Hardware Computing (Abstract)

Wen-Tsai Sung

pp. 307-312

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Vascular Tree Construction with Anatomical Realism for Retinal Images (Abstract)

pp. 313-318

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Simulation of Ultrasound Propagation in Cancellous Bone by Solving Elastic Wave Equation Using Finite Difference Time Domain Method (Abstract)

Nima Hemmati

Mohammad Djavad Abolhassani

pp. 319-323

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Brain Tissue Classification Using Independent Vector Analysis (IVA) for Magnetic Resonance Image (Abstract)

Yaw-Jiunn Chiou

Hsiang-Min Chen

Jyh Wen Chai

Clayton Chi-Chang Chen

pp. 324-329

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Tracking the Intracellular Dynamics of Transferrin-labeled QDs in Living Panc-1 Cells (Abstract)

pp. 330-334

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Image Analysis for High Content Screening with cellAnalyst (Abstract)

pp. 335-340

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Learning Scaling Coefficient in Possibilistic Latent Variable Algorithm from Complex Diagnosis Data (Abstract)

Zong-Xian Yin

pp. 341-343

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Newborn Screening System Based on Adaptive Feature Selection and Support Vector Machines (Abstract)

pp. 344-347

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Nonlinear Dynamic Indications in Time Series of Epilepsy Electroencephalogram (Abstract)

pp. 348-351

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Quantitative Analysis of Endodontic Treatment for Periapical Lesions in Intraoral Radiographs (Abstract)

pp. 352-355

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A Multidimensional Flow Cytometry Data Classification (Abstract)

Ming-Chih Shih

Shou-Hsuan Stephen Huang

Chung-Che Jeff Chang

pp. 356-359

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Multi-Modal Registration of Embryonic Images for In Vitro Fertilization (Abstract)

pp. 360-363

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Immunomagnetical Reduction Using High Tc Superconducting Quantum Interference Device (SQUID) (Abstract)

pp. 364-365

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Segmentation of Brain MR Images Using an Ant Colony Optimization Algorithm (Abstract)

pp. 366-369

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The MAPK Signal Pathway Research and New Drug Discovery (Abstract)

pp. 370-373

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Phylogenetic Analysis Using Nuclear-Encoded Mitochondrial Proteins (Abstract)

pp. 374-377

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A Novel Approach for Motif Identification in Unaligned Molecular Sequences (Abstract)

pp. 378-381

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Profiling the Nanoparticles Associated Protein-protein Interactions (Abstract)

Wei-Chen Liao

Nai-Kuei Huang

pp. 382-385

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A Platform for Identifying MicroRNA Targeting Genes (Abstract)

pp. 386-387

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Enzyme Relational Network Reveals Target Enzymes within Metabolic Submodules (Abstract)

Chalothorn Liamwirat

Supapon Cheevadthanarak

Asawin Meechai

Sakarindr Bhumiratana

pp. 388-391

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ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions (Abstract)

pp. 392-399

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Analysis of Autism Prevalence and Neurotoxins Using Combinatorial Fusion and Association Rule Mining (Abstract)

pp. 400-404

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Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks (Abstract)

pp. 405-409

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Microarray Gene Expression Analysis Using Combinatorial Fusion (Abstract)

Cameron McMunn-Coffran

Christina Schweikert

D. Frank Hsu

pp. 410-414

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Integration of Heterogeneous Medical Decision Support Systems Based on Web Services (Abstract)

Chung C. Chang

Hsueh-Ming Lu

pp. 415-422

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Wedjat: A Mobile Phone Based Medicine In-take Reminder and Monitor (Abstract)

pp. 423-430

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Beamformer-Based Spatiotemporal Imaging of Correlated Brain Activities (Abstract)

pp. 431-434

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EEG-Based Spatial Navigation Estimation in a Virtual Reality Driving Environment (Abstract)

pp. 435-438

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Automated Sleep Staging Using Single EEG Channel for REM Sleep Deprivation (Abstract)

pp. 439-442

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Faster and Active Surveillance of Hospital-Acquired Infections: A Model for Settings with High Sensitivity Predictors (Abstract)

pp. 443-448

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SCDL Applications to Drug Discovery (Abstract)

pp. 449-454

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Describing Dynamic Biological Systems in SPDL and SCDL (Abstract)

pp. 455-460

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Normalizing Biomedical Name Entities by Similarity-Based Inference Network and De-ambiguity Mining (Abstract)

pp. 461-466

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An Integrative Tool for Gene Regulatory Network Reconstruction Based on Microarray Data (Abstract)

J.W. Ou

R.M. Hu

pp. 467-470

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Author Index (PDF)

pp. 471-474

Publisher's Information (PDF)

pp. 476