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Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'04)
Variable Number of Tandem Repeats (VNTR) Stands
Taichung, Taiwan, ROC
May 19-May 21
ISBN: 0-7695-2173-8
| ASCII Text | x | ||
| Xiaoan Dong, Sam Yuan Sung, Wing-Kin Sung, Chew Lim Tan, "Variable Number of Tandem Repeats (VNTR) Stands," 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE), pp. 483, Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'04), 2004. | |||
| BibTex | x | ||
| @article{ 10.1109/BIBE.2004.1317381, author = {Xiaoan Dong and Sam Yuan Sung and Wing-Kin Sung and Chew Lim Tan}, title = {Variable Number of Tandem Repeats (VNTR) Stands}, journal ={2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE)}, volume = {0}, year = {2004}, isbn = {0-7695-2173-8}, pages = {483}, doi = {http://doi.ieeecomputersociety.org/10.1109/BIBE.2004.1317381}, publisher = {IEEE Computer Society}, address = {Los Alamitos, CA, USA}, } | |||
| RefWorks Procite/RefMan/Endnote | x | ||
| TY - CONF JO - 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) TI - Variable Number of Tandem Repeats (VNTR) Stands SN - 0-7695-2173-8 SP EP A1 - Xiaoan Dong, A1 - Sam Yuan Sung, A1 - Wing-Kin Sung, A1 - Chew Lim Tan, PY - 2004 KW - null VL - 0 JA - 2012 IEEE 12th International Conference on Bioinformatics & Bioengineering (BIBE) ER - | |||
This paper introduces a novel motif discovery algorithm based on the use of constraint mechanism and constraint rules. The key idea is to convert sets of similar substrings of the DNA sequences into patterns, as early as possible, using constraint mechanism or constraint rules. The advantages are two folds. Firstly, the approach generates limited number of patterns while still guaranteeing that the actual motifs are contained in the pattern set. Secondly, the procedure for deriving patterns is very cost-effective since it can be considered as that we use many "look ahead" to speed up the procedure. Therefore, the algorithm has the advantages of the high sensitivity of pattern-driven algorithms as well as the efficiency of sample-driven algorithms.
Citation:
Xiaoan Dong, Sam Yuan Sung, Wing-Kin Sung, Chew Lim Tan, "Variable Number of Tandem Repeats (VNTR) Stands," bibe, pp.483, Fourth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'04), 2004
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