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Issue No.03 - May-June (2013 vol.15)
pp: 22-31
Bill Howe , University of Washington
Daniel Halperin , University of Washington
Francois Ribalet , University of Washington
Sagar Chitnis , University of Washington
E. Virginia Armbrust , University of Washington
ABSTRACT
SQLShare is a Web-based application that emphasizes a simple upload-query-share protocol over conventional database design and uses ad hoc interactive query over general-purpose programming. Here, a case study examines the use of SQLShare as an alternative to script-based scientific workflows for a project in observational biological oceanography.
INDEX TERMS
Database systmes, Workflow management software, Sociology, Statistics, Sea measurements, Data processing, Scientific computing, scientific computing, scientific databases, database applications, workflow management
CITATION
Bill Howe, Daniel Halperin, Francois Ribalet, Sagar Chitnis, E. Virginia Armbrust, "Collaborative Science Workflows in SQL", Computing in Science & Engineering, vol.15, no. 3, pp. 22-31, May-June 2013, doi:10.1109/MCSE.2013.42
REFERENCES
1. J. Swalwell, F. Ribalet, and E.V. Armbrust, “SeaFlow: A Novel Underway Flow-Cytometer for Continuous Observations of Phytoplankton in the Ocean,” Limnology and Oceanography: Methods, 2011, vol. 9, pp. 466–477.
2. E.F. Codd, “A Relational Model of Data for Large Shared Data Banks,” Comm. ACM, 1970, vol. 13, no. 6, pp. 377–387.
3. F. Ribalet, D.M. Schruth, and E.V. Armbrust, “FlowPhyto: Enabling Automated Analysis of Microscopic Algae from Continuous Flow Cytometric Data,” Bioinformatics, vol. 27, no. 5, 2011, pp. 732–733.
4. A. Key et al., “VizDeck: Self-Organizing Dashboards for Visual Analytics,” Proc. ACM Sigmod Conf., ACM, 2012, pp. 681–684.
5. B. Howe et al., “Database-as-a-Service for Long-Tail Science,” Proc. 23rd Scientific and Statistical Database Management Conf., Springer-Verlag, 2011, pp. 480–489.
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