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Issue No.01 - Jan.-Feb. (2013 vol.15)
pp: 76-83
Heidi J.C. Ellis , Western New England University
Gerard Weatherby , Western New England University
Ronald J. Nowling , University of Connecticut Health Center
Jay Vyas , University of Connecticut Health Center
Matt Fenwick , University of Connecticut Health Center
Michael Gryk , University of Connecticut Health Center
ABSTRACT
The Connecticut Joint NMR University Research (Connjur) Group has developed a pipeline-architecture-based data-translation tool, which formats data to conform to the required input for scientific data-processing tools. The Connjur Spectrum Translator (Connjur-ST) supports data-format translation for experiments that use nuclear magnetic resonance to determine the structure of large protein molecules.
INDEX TERMS
Nuclear magnetic resonance, Proteins, Computer architecture, Software tools, Magnetic field measurement, Magnetic domains, scientific computing, computer applications, biology, genetics
CITATION
Heidi J.C. Ellis, Gerard Weatherby, Ronald J. Nowling, Jay Vyas, Matt Fenwick, Michael Gryk, "A Pipeline Software Architecture for NMR Spectrum Data Translation", Computing in Science & Engineering, vol.15, no. 1, pp. 76-83, Jan.-Feb. 2013, doi:10.1109/MCSE.2012.60
REFERENCES
1. M.R. Gryk, J. Vyas, and M.W. Maciejewski, “Biomolecular NMR Data Analysis,” Progress in Nuclear Magnetic Resonance Spectroscopy, vol. 56, no. 4, 2010, pp. 329–345.
2. F. Delaglio et al., “NMRPipe: A Multidimensional Spectral Processing System Based on UNIX Pipes,” J. Biomolecular NMR, vol. 6, no. 3, pp. 277–293.
3. R.J. Nowling et al., “CONNJUR Spectrum Translator: An Open Source Application for Reformatting Time-Domain NMR Data,” J. Biomolecular NMR, vol. 50, no. 1, 2011, pp. 83–89.
4. I. Wassink et al., “New Interactions with Workflow Systems,” Proc. European Conf. Cognitive Ergonomics: Designing beyond the Product—Understanding Activity and User Experience in Ubiquitous Environments, VTT Technical Research Centre of Finland, 2009, pp. 29:1–29:5; http://dl.acm.orgcitation.cfm?id=1690508.1690549.
5. W. Benger, “On Safari in the File Format Jungle: Why Can't You Visualize My Data?” Computing in Science & Eng., vol 11, no. 6, 2009, pp. 98–102.
6. M. Shaw and D. Garlan, Software Architecture: Perspectives on an Emerging Discipline, Prentice Hall, 1996.
7. M. Rancea, J.P. Loriab, and A.G. Palmer, “Sensitivity Improvement of Transverse Relaxation-Optimized Spectroscopy,” J. Magnetic Resonance, vol. 136, no. 1, 1999, pp. 92–101.
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