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Issue No.05 - September/October (2010 vol.12)
pp: 8-13
<p>Roundtable participants identified ways of making computational research details readily available, which is a crucial step in addressing the current credibility crisis.</p>
Computational science, scientific method, reproducible research, data sharing, code sharing, scientific integrity
"Reproducible Research", Computing in Science & Engineering, vol.12, no. 5, pp. 8-13, September/October 2010, doi:10.1109/MCSE.2010.113
1. R. Stevens, T. Zacharia, and H. Simon, Modeling and Simulation at the Exascale for Energy and the Environment, report, US Dept. Energy Office of Advance Scientific Computing Research, 2008; TownHall.pdf.
2. D. Donoho et al., "Reproducible Research in Computational Harmonic Analysis," Computing in Science & Eng., vol. 11, no. 1, 2009, pp. 8–18.
3. "The Clouds of Unknowing," The Economist,18 Mar. 2010; www.economist.comdisplaystory.cfm?story_id=15719298 .
4. K. Baggerly and K. Coombes, "Deriving Chemosensitivity from Cell Lines: Forensic Bioinformatics and Reproducible Research in High-Throughput Biology," Annals Applied Statistics, vol. 3, no. 4, 2009, pp. 1309–1334.
5. B. Alberts, "Editorial Expression of Concern," Science, vol. 327, no. 5962, 2010, p. 144; 5962144-a.
6. G. Chang et al., "Retraction," Science, vol. 314, no. 5807, 2006, p. 1875; 58071875b.
7. Toronto International Data Release Workshop, "Prepublication Data Sharing," Nature, vol. 461, pp. 168–170; full461168a.html.
8. M. Altman and G. King, "A Proposed Standard for the Scholarly Citation of Quantitative Data," D-Lib Magazine, vol. 13, nos. 3-4, 2007; .
9. V. Stodden, "Enabling Reproducible Research: Licensing for Scientific Innovation," Int'l J. Comm Law & Policy, vol. 13, Jan. 2009; www.ijclp.netissue_13.html.
10. V. Stodden, "The Legal Framework for Reproducible Scientific Research: Licensing and Copyright," Computing in Science & Eng., vol. 11, no. 1, 2009, pp. 35–40.
11. F. Leisch, "Sweave and Beyond: Computations on Text Documents," Proc. 3rd Int'l Workshop on Distributed Statistical Computing, 2003; ProceedingsLeisch.pdf.
12. J. Mesirov, "Accessible Reproducible Research," Science, vol. 327, no. 5964, 2010, pp. 415–416.
13. R. Peng, "Reproducible Research and Biostatistics," Biostatistics, vol. 10, no. 3, 2009, pp. 405–408.
14. G. Steinhart, D. Dietrich, and A. Green, "Establishing Trust in a Chain of Preservation: The TRAC Checklist Applied to a Data Staging Repository (DataStaR)," D-Lib Magazine, vol. 15, nos. 9-10, 2009.
15. G. Steinhart, "DataStar: An Institutional Approach to Research Data Curation," IAssist Quarterly, vol. 31, no. 3-4, 2007, pp. 34–39.
16. V. Stodden, The Scientific Method in Practice: Reproducibility in the Computational Sciences, paper no. 4773-10, MIT Sloan Research, 9 Feb. 2010; .
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