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From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development
July/August 2007 (vol. 9 no. 4)
pp. 50-60
Trevor Cickovski, University of Notre Dame
Kedar Aras, University of Notre Dame
Maciej Swat, Indiana University
Roeland M.H. Merks, Flanders Institute for Biotechnology and Ghent University
Tilmann Glimm, Western Washington University
H. George E. Hentschel, Emory University
Mark S. Alber, University of Notre Dame
James A. Glazier, Indiana University
Stuart A. Newman, New York Medical College
Jesus A. Izaguirre, University of Notre Dame
To gain performance, developers often build scientific applications in procedural languages, such as C or Fortran, which unfortunately reduces flexibility. To address this imbalance, the authors present CompuCell3D, a multitiered, flexible, and scalable problem-solving environment for morphogenesis simulations that's written in C++ using object-oriented design patterns.
Index Terms:
software engineering, simulation, modeling, computer applications
Citation:
Trevor Cickovski, Kedar Aras, Maciej Swat, Roeland M.H. Merks, Tilmann Glimm, H. George E. Hentschel, Mark S. Alber, James A. Glazier, Stuart A. Newman, Jesus A. Izaguirre, "From Genes to Organisms Via the Cell: A Problem-Solving Environment for Multicellular Development," Computing in Science and Engineering, vol. 9, no. 4, pp. 50-60, July-Aug. 2007, doi:10.1109/MCSE.2007.74
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