The Community for Technology Leaders
RSS Icon
Issue No.11 - November (2011 vol.44)
pp: 44-52
Dan Stanzione , University of Texas at Austin
As plant biology becomes a data-driven science, new computing technologies are needed to address many formidable challenges. The iPlant Collaborative provides cyberinfrastructure for researchers and developers to collaborate in creating better tools, workflows, algorithms, and ontologies.
High-performance computing, iPlant Collective, Plant science, System architecture, Multitier systems
Dan Stanzione, "The iPlant Collaborative: Cyberinfrastructure to Feed the World", Computer, vol.44, no. 11, pp. 44-52, November 2011, doi:10.1109/MC.2011.297
1. NSF Cyberinfrastructure Council, "NSF's Cyberinfrastructure Vision for 21st Century Discovery," Nat'l Science Foundation, 20 Jan. 2006;
2. Food and Agriculture Organization of the United Nations, The State of Food and Agriculture: Livestock in the Balance, 2009; SOFAe.pdf.
3. K.A. Wetterstrand, "DNA Sequencing Costs: Data from the NHGRI Large-Scale Genome Sequencing Program," 4 Feb. 2011, Nat'l Human Genome Research Inst.; www.genome.govsequencingcosts.
4. M.Y. Galperin and G.R. Cochrane, "The 2011 Nucleic Acids Research Database Issue and the Online Molecular Biology Database Collection," Nucleic Acids Research, Jan. 2011, pp. D1-D6.
5. D.R. Zerbino and E. Birney, "Velvet: Algorithms for De Novo Short Read Assembly Using de Bruijn Graphs," Genome Research, May 2008, pp. 821-829.
6. L. Koersterke et al., "An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association Studies," Proc. 2011 IEEE Int'l Parallel and Distributed Processing Symp. Workshops and PhD Forum (IPDPSW 11), IEEE, 2011, pp. 523-530.
7. Arcot Rajasekar et al., iRODS Primer: Integrated Rule-Oriented Data System, Morgan & Claypool, 2010.
8. D.D.G. Gessler et al., "SSWAP: A Simple Semantic Web Architecture and Protocol for Semantic Web Services," BMC Bioinformatics, 23 Sept. 2009;
9. T.J. Wheeler, "Large-Scale Neighbor-Joining with NINJA," Proc. 9th Workshop Algorithms Bioinformatics (WABI 09), LNBI 5724, Springer, 2009, pp. 375-389.
23 ms
(Ver 2.0)

Marketing Automation Platform Marketing Automation Tool