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Viewing Geometric Protein Structures From Inside a CAVE
July 1996 (vol. 16 no. 4)
pp. 58-61
We compute and visualize four geometric protein models: the space filling diagram, the solvent accessible surface, the molecular surface, and the alpha complex. Relations between the models are illustrated via continuous deformations. A supercomputer does the computations at a remote site and sends the results through I-WAY to the Cave Automatic Virtual Environment for visualization.

1. B. Lee and F.M. Richards, "The Interpretation of Protein Structures: Estimation of Static Accessibility," J. Molecular Biology, Vol. 55, 1971, pp. 379-400.
2. F.M. Richards, "Areas, Volumes, Packing, and Protein Structure," Ann. Rev. Biophysical Bioengineering, Vol. 6, 1977, pp. 151-176.
3. C. Cruz-Neira, D. Sandin, and T. DeFanti, "Surround-Screen Projection-Based Virtual Reality: The Design and Implementation of the CAVE," Proc. SIGGRAPH 1993, ACM Press, New York, 1993, pp. 135-142.
4. N. Akkiraju, Molecule Triangulation from Alpha Shapes, doctoral dissertation, University of Illi nois, Urbana, Ill., 1996.
5. N. Akkiraju and H. Edelsbrunner, "Triangulating the Surface of a Molecule," to be published in Discrete Applied Mathematics.
6. H. Edelsbrunner and D.P. Mücke, “Three-Dimensional Alpha Shapes,” ACM Trans, Graphics, vol. 13, pp. 43-72, 1994.
7. H. Edelsbrunner, "The Union of Balls and Its Dual Shape," Discrete and Computational Geometry, Vol. 13, 1995, pp. 415-440.
8. M.L. Connolly, "Molecular Surface Triangulation," J. Applied Crystallography, Vol. 18, 1985, pp. 499-505.
9. R.J. Zauhar and R.S. Morgan, "Computing the Electric Potential of Biomolecules: Application of a New Method of Molecular Surface Triangulation," J. Computational Chemistry, Vol. 11, 1990, pp. 603-622.
10. H. Edelsbrunner et al., "Measuring Proteins and Voids in Proteins," Proc. 28th Ann. Hawaii Int'l Conf. System Sciences, Vol. 5: Biotechnology Computing, IEEE Computer Society Press, Los Alamitos, Calif., 1995, pp. 256-264.

Index Terms:
Geometric modeling, virtual reality, CAVE (Cave Automatic Virtual Environment).
Citation:
Nataraj Akkiraju, Herbert Edelsbrunner, Ping Fu, Jiang Qian, "Viewing Geometric Protein Structures From Inside a CAVE," IEEE Computer Graphics and Applications, vol. 16, no. 4, pp. 58-61, July 1996, doi:10.1109/38.511855
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